Detail information of AT2G44950_circ_g.2


General Information
CircRNA Name AT2G44950_circ_g.2
ID in PlantcircBase ath_circ_018426
Alias NA
Organism Arabidpsis thaliana
Position chr2: 18542859-18543544  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G44950
Parent gene annotation E3 ubiquitin-protein ligase BRE1-like 1
Parent gene strand -
Alternative splicing 2_circ_igg.3 2_circ_igg.4 2_circ_ag.5 2_circ_ag.6 AT2G44860_circ_g.1 AT2G44860_circ_g.2 AT2G44860_circ_g.3 AT2G44870_circ_g.1 AT2G44900_circ_g.1 AT2G44900_circ_g.2 AT2G44910_circ_g.1 AT2G44910_circ_g.2 AT2G44920_circ_g.1 AT2G44920_circ_g.2 AT2G44920_circ_g.3 AT2G44950_circ_g.1 AT2G44950_circ_g.3 AT2G44950_circ_g.4 AT2G44950_circ_g.5 AT2G44950_circ_g.6 AT2G44950_circ_g.7 AT2G44970_circ_g.1 AT2G44970_circ_g.2 AT2G44970_circ_g.3 AT2G44970_circ_g.4 AT2G44970_circ_g.5 AT2G44980_circ_g.1 AT2G45000_circ_g.1 AT2G45000_circ_g.2 AT2G45000_circ_g.3 AT2G45023_circ_g.1 AT2G45030_circ_g.1 AT2G45030_circ_g.2 AT2G45030_circ_g.3 AT2G45060_circ_g.1 AT2G45060_circ_g.2 AT2G45060_circ_g.3 AT2G45060_circ_g.4 AT2G45060_circ_g.5 AT2G45100_circ_g.1 AT2G45135_circ_g.1 AT2G45140_circ_g.1 AT2G45140_circ_g.2 AT2G45140_circ_g.3 AT2G45160_circ_g.1 AT2G45170_circ_g.1 AT2G45170_circ_g.2 AT2G45170_circ_g.3 AT2G45170_circ_g.4 AT2G45180_circ_g.1 AT2G45180_circ_g.2 AT2G45180_circ_g.3 AT2G45180_circ_g.4 AT2G45180_circ_g.5 AT2G45180_circ_g.6 AT2G45180_circ_g.7 AT2G45180_circ_g.8 AT2G45180_circ_g.9 AT2G45180_circ_g.10 AT2G45180_circ_g.11 AT2G45180_circ_g.12 AT2G45180_circ_g.13 AT2G45180_circ_g.14 AT2G45180_circ_g.15 AT2G45180_circ_g.16 AT2G45190_circ_g.1 AT2G45190_circ_g.2 AT2G45190_circ_g.3 AT2G45200_circ_g.1 AT2G45200_circ_g.2 AT2G45200_circ_g.3 AT2G45200_circ_g.4 AT2G45200_circ_g.5 AT2G45200_circ_g.6 AT2G45240_circ_g.1 AT2G45240_circ_g.2 AT2G45240_circ_g.3 AT2G45240_circ_g.4 AT2G45240_circ_g.5 AT2G45240_circ_g.6 AT2G45240_circ_g.7 AT2G45240_circ_g.8 AT2G45240_circ_g.9 2_circ_ag.10 AT2G45250_circ_g.1 AT2G45250_circ_g.2
Support reads 7
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G44950.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCATATGCACTGCCTTGCTGTATATCCTTATCCATGATGTATTTATCGATAAGCAGAGTATC
TTGCATCTGCCTAGAAGTTATGCCTTCCAAGAAAAGctcttttgggcgatcgttgcaggcctta
cacttcagaatttctttaaattcactgagttcttgtcggagcttttgaatggccgatgatcctt
ctatgaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTTTTGGGCGATCGTTGCAGGCCTTACACTTCAGAATTTCTTTAAATTCACTGAGTTCTTGT
CGGAGCTTTTGAATGGCCGATGATCCTTCTATGAGAGACCGAAGACGAGAAACTTTCTTTTTGG
CTATTTCCATTTCCTCCTCTATCCTTCTCCTATTGAACCTGATATACGCAGAAAAGAACGATAC
CTTCATCACTAACACTTGTTTATGACTATTAATTAGGATAGAGAAGATGGAGGGAGCAATTGAT
TTACCTTTCAATCTCCAGTTCCAGTTCTAATGCCCCATAATCCAGCCGACTTTGCTCAACTTTA
GAATGGGACTCCTCCAGCCTTGACCTAGCTTGTTCCAAGCCATTCCCGATGTCTGCACGTTTCT
TTTGCAGATTTTCAAGAGAAACAGACTTTTGATATTTATCTTCCGCTAGTTTCTGAAACTGATC
TGTGCAGAACCTCAACTGCAAGGAAAAAGAAAAACACCTTAGTCAAAGTCTCACAATAAGGAGG
CTTACAATTTGAGCATACGGGCACACACAGATATACCTGATCTTCAATTCTTGATGATTTCTTG
GATAGGAAACTGGCATATGCACTGCCTTGCTGTATATCCTTATCCATGATGTATTTATCGATAA
GCAGAGTATCTTGCATCTGCCTAGAAGTTATGCCTTCCAAGAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.170914151
Functional Information
Coding potential Y
Potential coding position 18543515-18542861(-)
Potential amino acid sequence MQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKK
RADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLI
EGSSAIQKLRQELSEFKEILKCKACNDRPKELFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYA
SFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVE
QSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKEILKCK
ACNDRPKELFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQK
LAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKVEQSRLDYGALELELEIERFNRRRI
EEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKEILKCKACNDRPKELFLEGITSRQMQDTL
LIDKYIMDKDIQQGSAYASFLSKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIG
NGLEQARSRLEESHSKVEQSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLIEGSSA
IQKLRQELSEFKEILKCKACNDRPKE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017