Detail information of Os08g0307400_circ_g.2


General Information
CircRNA Name Os08g0307400_circ_g.2
ID in PlantcircBase osa_circ_036650
Alias Os_ciR1995
Organism Oryza sativa
Position chr8: 12856350-12862994  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0307400
Parent gene annotation Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si
milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1
37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307
400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740
0-03)
Parent gene strand -
Alternative splicing Os08g0307400_circ_g.1 Os08g0307400_circ_g.3 Os08g0307400_circ_g.4 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.7 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9
Support reads 4/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os08t0307400-02:8
Os08t0307400-01:8
Os08t0307400-03:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCTTCGTCGCT
GGCCCTTTCAAACACGCCGACAGCATAAGCACGAACcttagaagtccctttgtctgtgatactc
tcaatatttgatccagtcatcagataaaaaagattcagtatgaggttgctggactttcgtaata
tgttgtat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1196
Transcript exons: 12856350-12856488,12856578-12856730,12858088-12858242,12
860561-12860698,12860787-12860957,12861120-12861301,1286
1411-12861532,12862859-12862994
CTTAGAAGTCCCTTTGTCTGTGATACTCTCAATATTTGATCCAGTCATCAGATAAAAAAGATTC
AGTATGAGGTTGCTGGACTTTCGTAATATGTTGTATGCCTCGCAACAGTAGGACTTGAATCTTG
CATAGTATTCACTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGG
TGATGGTGGTGCAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGT
CTTCCATCGTCTTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAA
TGACACTGTAGCCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGG
GCCATCTTCATCCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATC
TTTGCAACAGAAATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTT
GATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTAT
TTGAATAACCAACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCC
CCATTCACAGTACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTT
CAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTT
TTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCA
TGTTTGACATTTGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTA
TCAAACTCTGCCACACTTGAAATCCATTTTCCTCCTTATGTATCTCATTATAGCATCTTCAAGC
ATCTCATATGTACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAATACC
AGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTAGACG
AGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAGTTCT
TCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC

Transcript length: 1200
Transcript exons: 12856350-12856488,12856578-12856730,12858088-12858242,12
860561-12860698,12860787-12860957,12861120-12861305,1286
1411-12861532,12862859-12862994
CTTAGAAGTCCCTTTGTCTGTGATACTCTCAATATTTGATCCAGTCATCAGATAAAAAAGATTC
AGTATGAGGTTGCTGGACTTTCGTAATATGTTGTATGCCTCGCAACAGTAGGACTTGAATCTTG
CATAGTATTCACTTTCAGTACCACCCATGGCCTCAACCATTTCTTTGCATAATTTCATCGGTGG
TGATGGTGGTGCAAATCGATGTGGTTGTTCCCCAAGCATATACGAGAAGTCAACATGGAAAAGT
CTTCCATCGTCTTGTAGGAGAAGGTTGTCAAGATGCCTGTCTCCAATCCCCAGTATGTATGTAA
TGACACTGTAGCCAGCACAACTTTTTATAAAAGTTTCCAAACATTGGGCAGTTATACCAAAAGG
GCCATCTTCATCCGGATTACACTTTTGTAGGTAACTTTCTATACTGCCCGTTTTTTGTATAATC
TTTGCAACAGAAATTGAAGGAATAAACTCAACCAACCCTTCTTCTAGACCAGTCGCAAGAACTT
GATAAGGAGTAAGGTGTAAGTCTAGATTATCTGACTTGAGCAACCGATCCATCAAAGAGATTAT
TTGAATAACCAACTGATCCTTGCGGAGATTATCTCCCTTCTTGAAAATCATTTTCGATGTACCC
CCATTCACAGTACTAAATGCTATACACAATGGATAATTAGCACTTTTGAATACCAATGACTCTT
CAGGCACAATTCCGTCAAGGAGGACAGTCGGTGTTAATGGAGATGGAATTGGCTCACTGAAGTT
TTTAAGCTCACTGAAAATTCCGGAGAATAACTGTTCTAATATCCTGCCTTTAGTTTGTGCGTCA
TGTTTGACATTTGATAGTTCCTTCATTATAGAACGTAACTGAGCAGTGAGTTCTGCCTGCTCTA
TCAAACTCTGCCACACTTGAAATCCATTTTCCTCCTTATGTACTGATCTCATTATAGCATCTTC
AAGCATCTCATATGTACATAGATACCTTCTTGCATGAGAAGGATCATGAAGCTCAACAACTAAA
TACCAGCGAAGAAAGCTAGCAAGTTCGTAATTTGACAAAGCCCGATTCACAAGGAAGTGTGCTA
GACGAGATCTGTCAGATCTTTCAAACCGCAGGCCTTGTACAAGTTGCAGCAAATAGCATTGCAG
TTCTTCGTCGCTGGCCCTTTCAAACACGCCGACAGCATAAGCACGAAC

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osi_circ_007655* osi_circ_017756
PMCS 0.198964604
Functional Information
Coding potential Y
Potential coding position 12861436-12856352(-)
Potential amino acid sequence MLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSE
LKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLV
IQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDE
DGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAP
PSPPMKLCKEMVEAMGGTESEYYARFKSYCCEAYNILRKSSNLILNLFYLMTGSNIESITDKGT
SKVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRLAHFLVNRALSNYELASFLRWYLVV
ELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQ
TKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTS
KMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQ
KTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFH
VDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMGGTESEYYARFKSYCCEAYNILRKSSNLILNLF
YLMTGSNIESITDKGTSKVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRLAHFLVNRA
LSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLIEQAELTAQ
LRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPEESLVFKSA
NYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQVLATGLEE
GLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVITYILGIGD
RHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMGGTESEYYARFKSYCCE
AYNILRKSSNLILNLFYLMTGSNIESITDKGTSKVRAYAVGVFERASDEELQCYLLQLVQGLRF
ERSDRSRLAHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENG
FQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTV
LLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNL
DLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIK
SCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMG
GTESEYYARFKSYCCEAYNILRKSSNLILNLFYLMTGSNIESITDKGTSK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017