Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os08g0307400_circ_g.2 |
ID in PlantcircBase | osa_circ_036650 |
Alias | Os_ciR1995 |
Organism | Oryza sativa |
Position | chr8: 12856350-12862994 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os08g0307400 |
Parent gene annotation |
Similar to Phosphatidylinositol 3-kinase 1. (Os08t0307400-01);Si milar to Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.1 37) (PI3- kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5). (Os08t0307 400-02);Similar to Phosphatidylinositol 3-kinase 1. (Os08t030740 0-03) |
Parent gene strand | - |
Alternative splicing | Os08g0307400_circ_g.1 Os08g0307400_circ_g.3 Os08g0307400_circ_g.4 Os08g0307400_circ_g.5 Os08g0307400_circ_g.6 Os08g0307400_circ_g.7 Os08g0307400_circ_g.8 Os08g0307400_circ_g.9 |
Support reads | 4/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os08t0307400-02:8 Os08t0307400-01:8 Os08t0307400-03:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_007655* osi_circ_017756 |
PMCS | 0.198964604 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
12861436-12856352(-) |
Potential amino acid sequence |
MLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSE LKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLV IQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDE DGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAP PSPPMKLCKEMVEAMGGTESEYYARFKSYCCEAYNILRKSSNLILNLFYLMTGSNIESITDKGT SKVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRLAHFLVNRALSNYELASFLRWYLVV ELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLIEQAELTAQLRSIMKELSNVKHDAQ TKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPEESLVFKSANYPLCIAFSTVNGGTS KMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQVLATGLEEGLVEFIPSISVAKIIQ KTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVITYILGIGDRHLDNLLLQDDGRLFH VDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMGGTESEYYARFKSYCCEAYNILRKSSNLILNLF YLMTGSNIESITDKGTSKVRAYAVGVFERASDEELQCYLLQLVQGLRFERSDRSRLAHFLVNRA LSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENGFQVWQSLIEQAELTAQ LRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTVLLDGIVPEESLVFKSA NYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNLDLHLTPYQVLATGLEE GLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIKSCAGYSVITYILGIGD RHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMGGTESEYYARFKSYCCE AYNILRKSSNLILNLFYLMTGSNIESITDKGTSKVRAYAVGVFERASDEELQCYLLQLVQGLRF ERSDRSRLAHFLVNRALSNYELASFLRWYLVVELHDPSHARRYLCTYEMLEDAIMRSVHKEENG FQVWQSLIEQAELTAQLRSIMKELSNVKHDAQTKGRILEQLFSGIFSELKNFSEPIPSPLTPTV LLDGIVPEESLVFKSANYPLCIAFSTVNGGTSKMIFKKGDNLRKDQLVIQIISLMDRLLKSDNL DLHLTPYQVLATGLEEGLVEFIPSISVAKIIQKTGSIESYLQKCNPDEDGPFGITAQCLETFIK SCAGYSVITYILGIGDRHLDNLLLQDDGRLFHVDFSYMLGEQPHRFAPPSPPMKLCKEMVEAMG GTESEYYARFKSYCCEAYNILRKSSNLILNLFYLMTGSNIESITDKGTSK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |