Detail information of Os02g0436400_circ_g.1


General Information
CircRNA Name Os02g0436400_circ_g.1
ID in PlantcircBase osa_circ_014540
Alias NA
Organism Oryza sativa
Position chr2: 13917681-13921187  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os02g0436400
Parent gene annotation NAD(P)-binding domain containing protein. (Os02t0436400-01)
Parent gene strand -
Alternative splicing Os02g0436400_circ_g.2
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os02t0436400-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACCTCAATAGCACTGAATGATACAGGAACTAACTGAAGACCAGCAGATACAGCTGCTTCAGC
AACAGCCTTCCCCATTTTCCCAGTACAACTATTCACctttttatggagaaacagggcagcatcc
acagttccctctgcgtaaattgaacggccacatacattgtgttgaaactcaaatgaaactctgc
ataaataa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTATGGAGAAACAGGGCAGCATCCACAGTTCCCTCTGCGTAAATTGAACGGCCACATACA
TTGTGTTGAAACTCAAATGAAACTCTGCATAAATAAGGGGTATCACCTCAGTACGTTGTGCTTG
TCAAGGCTCTCAATAGAATCCAGCAGACCTAGGAAAAGGTTTACTTACGTCTCATCCGGTGAAG
TGAGATGGTACATGTGAAATGCGTGACCAGAAAGATGTTCTTCTGGGACACCAACCAATGTAAG
CTGTTCCTGAGGATCCCGGACCTGCTTAACCTACAAGAAAGACATGTAGACCAGTGTGAGAGTT
TGTGAAGAACATCTCAAGGAGGTTTTGGTTATGCTCCAACAAAACTACAATGCAAGAAGCTGCT
TCAACAAAACTAGATATCAGCCTTAAGACCATTAGCCTAATAAAAGTGTGTTCGCTGCTGATGG
ATGGGAACATATCACCCCAGCACGGAAAACGGAGCAGTCCATTAGCGCATGATTAATTAAGTAT
TAGCTATTTTTTTTTCAAAAATAGATCAATATGATTTTTTTAAGCAACTTTCTTATAGAAACTT
TTTACAAAAAAAACGCACCGTTTAGCAGTTTGAAAAGCGTGCACGCGGAATTCAAGGGAGAGGG
GTTGGGAACCCTTGGGTCCGAACACACCCTAAGACATATTAGATCCAAACAAAAAGCGAGATTT
TACAGTACATCAAGCACCAACCCTAAAAGGTACTGACAGGTTGTCCAACACTGAATTTGCAGTG
TGCAGCATGTTACTCTGAGAGACAGACATTGGGACAAGTAAACTAGTACTACTAATTAAATCTA
AGTATCTAGTATAGCTCATTCTTGAAATGGAACAGAAGATGCATGCTTAGTTTCTTACATAATC
GTAAACTGATTTTTACATAAGAGAAAGCAAATGGCAATCCTCTAAAACTAACAATAATCTGCGA
AAGACAGATATGACAATGTTTCATAAAAAACAAATTCAACATAACGATTTTCTGACCATGTAAG
CTTCCAGTTAACATTTACCTCGTTCAAGTTAAATGACACACCCAACTTCTGAAAGCAAGAGATA
ACAGCTTTGGCCGTGCCAGAAATGTCCAATTTTGTAGCTTGATGAGACTCCATGACCTGCCAAT
TTTGTTATTTCAAAGAAGAGTCATGGGCCACTGCAAAATATGAAACTAAAGTATATGATGTACA
TTCAGTTATAACAATAGATGGATTCCAATGGAGACAAATAAGATAAACCTACTCACAACTGGAT
GTGATTCCAAGAGCCAAACCAGAATGAATACCACACAGTGGAGATAAATAAGATAAACTTACTG
CCTGAGTTATCCTTATCGACTAAACAAATGAATGCATCCTGCTGGACATTTATACTAAAATACT
AACTGTACTTTCTAGTATGTAAAGGGTGAAAACTCTAAATGGTTTAATAAGCTCTAGGTCTGCG
TCTGACAAGTAATAACTGTGGACCCCCGACTCTAAATATGTCAAGTACTAAATGTGTTCCTGCG
CCTATAACTACATCTCCCTAAGTAGTAAATGTGTTCCCTGAAACTGTAAATGCGCAGGGGCCTG
GTAGCACCGTTGACACTGAATAGTAGATATGTATTTTTTATAGATCATTTAGCTAGTCACTATA
GAGTTGTCAATCCAAATCTTCTGTGAAGTTTCAATTTGCAAGAATCTGTGCTTCAAAGTGAAGT
TCCATAGAGCTTAACATCTAAATAGAGTGTTGACTTGTCAAGAGGAGGCACTTTTCAAGTGTAA
GTCGTATGTGAGGCTGATTCCAAATAGCTTATGAGTCTAACCATCTCAGTCATAAATTTTGCAA
AGACTAAACCCCTGAAAAGTTAACTTTCATGTGGCATGTACAGTTGTACAAGCACAGGCTTACA
ATTCTAGCTCCACCACTGTGGTTTAGGACTGAAGCACAAATGCAGATAGAAGATAGGCATACTC
AGGGTGTTAACGGTAGTTAATTCAAATGATTAGAACATTAATGCATCATACATCATAATGGTTA
CCAATTAACAGAAATATCGCTGATCTTTCTTCCATTTTCCTACGATATAGCTAATTTCTGCAGT
TCCTAATGTAGCATGTAAGTTCCACATGGATACTGTTCCAGTGGTTTGGTTCATAAGTTCTCTA
CCACTTACTAGTTACTCCACTCACTTAAAACTTCCATACCAACTGAAATTGCTGAGCTAAATAC
CATCATGATTCTTTAATAAACTTCCTAACATCAAGTTAATATGATAAAGTTTTCTGTTTGCACA
TTATTGCAAGCAAATTACTGAGCCCATAATGAATACAAGTACACAACTCATATCAATCAACTGA
AGCACCAAATTTGATGTTGAATGAAGAACAAAGAGACAGTTATAATGCTTGCAAGGAAAAATCA
AACTATACCTCTAGTTTGTAACCTGAAAATGCACCGGGGAATTGCTCTGCCATGATTTCCATGG
CAGCAAGAAACGCGACAACCTAATTGGAAGGAAAAATAGGAGTAAGCAGTATTAATAAGGAGAA
GATCATTAGCTTGACCATGCAATGGAAATAGTTATACCTGCTTCCCCATCTGTGGGGATATCAC
AGCATACACGTTTGCGTCCTCAACTGTTTTGTGCAACAGTTGCCTATTTCCACCTGTTGTGCCC
ATAACAAATGGCAATCCAAGTTTACAGTAAAGCTCAGCATTAGCTGCACATCAAAAACACCATA
AATGTCAGATTAGCAGCAATAATAGTGAGCAAATAATATGAAAATAAGGAACATAAAGCATATC
AGAGAGTTTAATTTAATTAACTAACTAATAAATAAAAGTTAAAAGGCTGACATAAGATGAAGAG
CAGTAGCGGCTATCCTGCCAAACCTACTTCCGATAGAATATCAACTAAGGAAGATTGGATTCTG
TAGTTAAATATTCCTGTTTCTTTTTGTACAGTTGCAAACAGAACAACAGACAACCATACATACA
TAAGCTAACGGGATCATTATAATCGAACATACAACTTAATGATTACAACTTGCTCTTCTATCCA
TTCATCAAAATATACGATAATTTTCAACTAGGTTCAGTTGTATGCACTATGTAGAAGAAGCTCG
AGCTGAACATGAGATAGGGATTTGTCTGATATAAACAACCGGCAGTTTTTGCTGATGCAATTAC
GGAATGCTTACTTTTGGTAGAGTTTAGCATATAAGGAGATCAAGCAACAGAAAATATTTATATG
CTCACCATTAACAGCATCAGGAACAGTGTAGTCAACAACTATCATATCTGGGTAATCCTTAGCA
ATCGAAGGGAGAATACTTTCTCCTTCAGATGGGTCACGAATATAAATTTCCCTATCACAAATTT
CAACCTTTCCATCAGGAACCTCAATAGCACTGAATGATACAGGAACTAACTGAAGACCAGCAGA
TACAGCTGCTTCAGCAACAGCCTTCCCCATTTTCCCAGTACAACTATTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.111650359
Functional Information
Coding potential Y
Potential coding position 13921107-13917872(+)
13921168-13917683(-)
13917865-13921186(-)
Potential amino acid sequence MIQELTEDQQIQLLQQQPSPFSQYNYSPFYGETGQHPQFPLRKLNGHIHCVETQMKLSHPVK*(
+)
MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVD
YTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIM
AEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGV
PEEHLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAE
AAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAV
NANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGA
FSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSG
HAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGL
QLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELY
CKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLE
VMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYH
LTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGLQLVPVSF
SAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPF
VMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQA
TKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDET
VSFEFQHNVCGRSIYAEGTVDAALFLHKK(-)
MRQFHLSFNTMYVAVQFTQRELWMLPCFSIKR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017