Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0436400_circ_g.1 |
ID in PlantcircBase | osa_circ_014540 |
Alias | NA |
Organism | Oryza sativa |
Position | chr2: 13917681-13921187 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os02g0436400 |
Parent gene annotation |
NAD(P)-binding domain containing protein. (Os02t0436400-01) |
Parent gene strand | - |
Alternative splicing | Os02g0436400_circ_g.2 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0436400-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.111650359 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13921107-13917872(+) 13921168-13917683(-) 13917865-13921186(-) |
Potential amino acid sequence |
MIQELTEDQQIQLLQQQPSPFSQYNYSPFYGETGQHPQFPLRKLNGHIHCVETQMKLSHPVK*( +) MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVD YTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIM AEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGV PEEHLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAE AAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAV NANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGA FSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSG HAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGL QLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELY CKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLE VMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYH LTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGLQLVPVSF SAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPF VMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQA TKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDET VSFEFQHNVCGRSIYAEGTVDAALFLHKK(-) MRQFHLSFNTMYVAVQFTQRELWMLPCFSIKR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |