Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os02g0436400_circ_g.1 |
| ID in PlantcircBase | osa_circ_014540 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr2: 13917681-13921187 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os02g0436400 |
| Parent gene annotation |
NAD(P)-binding domain containing protein. (Os02t0436400-01) |
| Parent gene strand | - |
| Alternative splicing | Os02g0436400_circ_g.2 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os02t0436400-01:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.111650359 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
13921107-13917872(+) 13921168-13917683(-) 13917865-13921186(-) |
| Potential amino acid sequence |
MIQELTEDQQIQLLQQQPSPFSQYNYSPFYGETGQHPQFPLRKLNGHIHCVETQMKLSHPVK*( +) MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVD YTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIM AEQFPGAFSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGV PEEHLSGHAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAE AAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAV NANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGA FSGYKLEVMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSG HAFHMYHLTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGL QLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELY CKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLE VMESHQATKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYH LTSPDETVSFEFQHNVCGRSIYAEGTVDAALFLHKKVNSCTGKMGKAVAEAAVSAGLQLVPVSF SAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPF VMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVMESHQA TKLDISGTAKAVISCFQKLGVSFNLNEVKQVRDPQEQLTLVGVPEEHLSGHAFHMYHLTSPDET VSFEFQHNVCGRSIYAEGTVDAALFLHKK(-) MRQFHLSFNTMYVAVQFTQRELWMLPCFSIKR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |