Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os02g0436400_circ_g.2 |
ID in PlantcircBase | osa_circ_014541 |
Alias | Os_ciR7685 |
Organism | Oryza sativa |
Position | chr2: 13920121-13921187 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os02g0436400 |
Parent gene annotation |
NAD(P)-binding domain containing protein. (Os02t0436400-01) |
Parent gene strand | - |
Alternative splicing | Os02g0436400_circ_g.1 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os02t0436400-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_011633 |
PMCS | 0.266071376 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
13921107-13920164(+) 13921168-13920123(-) |
Potential amino acid sequence |
MIQELTEDQQIQLLQQQPSPFSQYNYSPLVCNLKMHRGIALP*(+) MGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVD YTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIM AEQFPGAFSGYKLEVNSCTGKMGKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDP SEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVY AVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVNSCTGKMGKAVAEAAVSAGLQLVPVSFS AIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDYTVPDAVNANAELYCKLGLPFV MGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMAEQFPGAFSGYKLEVNSCTGKM GKAVAEAAVSAGLQLVPVSFSAIEVPDGKVEICDREIYIRDPSEGESILPSIAKDYPDMIVVDY TVPDAVNANAELYCKLGLPFVMGTTGGNRQLLHKTVEDANVYAVISPQMGKQVVAFLAAMEIMA EQFPGAFSGYKLE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |