Detail information of BGIOSGA016469_circ_ag.2


General Information
CircRNA Name BGIOSGA016469_circ_ag.2
ID in PlantcircBase osi_circ_014402
Alias Chr04:22474665_22477047(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20185566-20187948  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016469_circ_ag.1 BGIOSGA016469_circ_ag.3 BGIOSGA016469_circ_ag.4 BGIOSGA016469_circ_ag.5 BGIOSGA016469_circ_ag.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGAGGAAAACAAAAATGGCGTCGCCATGGGTTAATGATCTGATCCTCGTTTCTTGCAGGCTT
GCAGCAGCAGCAGGGCATCGGCGGCGATTATGGACGggtgaggagttgccatcggcgaaaggaa
agggcaaggaaaaagctctctgaatgccacatcgacatatcagccaagatcccaaccaaaaagg
acatcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGAGTTGCCATCGGCGAAAGGAAAGGGCAAGGAAAAAGCTCTCTGAATGCCACATCGAC
ATATCAGCCAAGATCCCAACCAAAAAGGACATCAGATACTGCCTCATTATGCTTTTTGTACAAG
GATACAAGGATTGGTTCTTCCTCCCTCCTCTCATCAATCAAAGGCCAAGAAGAACCAAGCTCCA
GGTTAGAATCTCAAAGCAAACAATCTACCTAAAACTTCCATCATCATCATCATCATCTGTTGTA
ACATTAACCTCCTCTCCATGCTGCTCTTTCAGTGCAGAAAGCTATCGCAAACAAGAAAGAGCTT
TGCCAGTTGCAGCCTGCCTTTGCATTTGGACTGCACCGGTTGCTTCATTCGTCAAGCACACCAC
AGGTTGAGGAAGCAGCCGTTTGACCATCTGTGCAGCAGCTCACCCAGGCACAGGATGGCGTACA
CCAGCAGGATGAACTTGAAGAGGAAAGGGAAGTAATGTGACAGCTCGACGCTCGACGAGTGCAG
GACCTGAAAGAGAAAACGCAGCGGCAAGCAAATTGAGGCGATGGTTCTCTTTCTTGTTAAAACT
CTCCGATGGCAACAGGTGACGACAATGCAGGTGGTTGAGTATAGCATATGCAGTGCATGAGGGG
GGGACTTGCCATGGCAACTCCGGCGAAGTGCGCCCGACGCCGGGACGGCGGCGGCGGCGGCGAC
GCGGCGGTGGCGTCGACGACGACGTGGTCCGATGGCAGCAGCAGCAGCGGCGGCTTGCCGTCGC
TCCCGGCGTCGCAGCACTGCGTGTTCGCCGGCGAGCACTTCCTGAGACGCTGTACGTCCTTGCT
TTGAAGAGGCTTTACGATGAAATCTTCAGCACCAGCATTCATGCATCTGTGTTTAAAAAAAGAT
TTTTTTTAAGAAAAAAAATCTTCTTATACTGCAGGATCACAGCAGTACTAGTACAGTACTAACA
GGATATCAGAGATCACGGGACAGCAATCAATGAACCACACAAATGTCGTGGATCTCTGTATCTG
ATACAGCATCTTCTCAGAGGTCGAACGCCCATTCGACCAAAGTGCGGATCATAATGGGAAGGCA
AGTACATGAACAGGCCAAGATGGGGTATTTACTGAAGCATTACTATTTCTCTTCCACTCCCTCG
GTTATATTTTAAATACAACCATAAATTTTCGTGTCTAACTTTGATCGTTCGTCTTATTTGAAAA
TTTTTTATAATTAGTATTTTTGTTGTAATGATATGATAAAACATGAATGGTACTTTATGCATGA
TTTATGTTTTTAAATTTTTTTTAAATAAGACAGATGATTAAAGTTGAGTATGAAAAAGTATGGC
TACACTTAAAATACGATAGATACGATAGAGGGAGTACAAATCTATGAAGCTTGTTAAATGGATG
GATGTATATAGCCATACGTATGTACAGTTCGCTGCTCAGTTGTACACTCGGTACAGTGTACTCC
TATTGTGCAGCAGGCAGAGGTATTGGGACCAAATTAAGACAGCTCCCCTTTTTTTTTTACTTGC
ACAGAAACAGATGCTGAAGGAAAAAAGAAAGAAAAAGGATGAAAGCCTCTCTGCCTCACCTGCT
GATCCTCTGGGGCTCGTTTTCCGACGACATGACGATCACTGGGATCGGCTTCAGAGGGCTCAGC
GCCTGCAAACATCCAATGAAGCCATGAGCCAATCACACATCAGGTTATTACTGGAACTAATTAC
TACTACTGCTAATTAGTACTAGGGACACCAAAATAGTAGTAGCAACAGCGCAAGTCTGAATTTC
TGCATTAACAGTATTTGTATTTATATTACCTTGATGGCTTTGAGAAGCTCATAACCAGTCATCT
CAGGCATGCAGTAGTCGGTGAGCACCATGTCGATGGCCTGCTCCTGCACATGATATTAAAAAGA
GTTTATTTAGCCATCCAATCACATCCTGGTTAGCTGTAATTACACCCAGCCGTGTCACTACCAC
TCCTGTGTTGAGCTCACAGGGCACACCAAGAATCAAACCCATGCCATTAACCAATCCCATTAAC
CCAAGCTTGGTGTCATCAAGACACCAGACAGCTCTGTCAGGCTGCTGTAAGACGGCGAGTTTTT
CTCTCTTTTTTAGTAGTATTTTTTTTCTTCTTCCTCTGCATGTCTCTCTCCCCCATGAAAAGAG
GCCACCTTTTGCTCCCAAAAGGCGGAGACGAGGAGGAACAGAAACCCTCACGCGCGCACGCGCG
CCGTACGGCCGGCGTACGGCCGGCGGTGCAGCGCCGCCGGCGAGAGGAGGAAAACAAAAATGGC
GTCGCCATGGGTTAATGATCTGATCCTCGTTTCTTGCAGGCTTGCAGCAGCAGCAGGGCATCGG
CGGCGATTATGGACG
Conservation Information
Conserved circRNAs osa_circ_023952
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021