Detail information of BGIOSGA016469_circ_ag.3


General Information
CircRNA Name BGIOSGA016469_circ_ag.3
ID in PlantcircBase osi_circ_014403
Alias Chr04:22474665_22477068(MH63RS2), Chr04:22418000_22420404(ZS97RS2), Chr04:22474665_22477068(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20185566-20187969  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016469_circ_ag.1 BGIOSGA016469_circ_ag.2 BGIOSGA016469_circ_ag.4 BGIOSGA016469_circ_ag.5 BGIOSGA016469_circ_ag.6
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: GCAACCGGTGCAGTCCAAATG
R: CCTCTCTGCCTCACCTGCTG
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCGCCATGGGTTAATGATCTGATCCTCGTTTCTTGCAGGCTTGCAGCAGCAGCAGGGCATCGG
CGGCGATTATGGACGGTAATGGCGTTGGTTTAAGTGggtgaggagttgccatcggcgaaaggaa
agggcaaggaaaaagctctctgaatgccacatcgacatatcagccaagatcccaaccaaaaagg
acatcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGAGGAGTTGCCATCGGCGAAAGGAAAGGGCAAGGAAAAAGCTCTCTGAATGCCACATCGAC
ATATCAGCCAAGATCCCAACCAAAAAGGACATCAGATACTGCCTCATTATGCTTTTTGTACAAG
GATACAAGGATTGGTTCTTCCTCCCTCCTCTCATCAATCAAAGGCCAAGAAGAACCAAGCTCCA
GGTTAGAATCTCAAAGCAAACAATCTACCTAAAACTTCCATCATCATCATCATCATCTGTTGTA
ACATTAACCTCCTCTCCATGCTGCTCTTTCAGTGCAGAAAGCTATCGCAAACAAGAAAGAGCTT
TGCCAGTTGCAGCCTGCCTTTGCATTTGGACTGCACCGGTTGCTTCATTCGTCAAGCACACCAC
AGGTTGAGGAAGCAGCCGTTTGACCATCTGTGCAGCAGCTCACCCAGGCACAGGATGGCGTACA
CCAGCAGGATGAACTTGAAGAGGAAAGGGAAGTAATGTGACAGCTCGACGCTCGACGAGTGCAG
GACCTGAAAGAGAAAACGCAGCGGCAAGCAAATTGAGGCGATGGTTCTCTTTCTTGTTAAAACT
CTCCGATGGCAACAGGTGACGACAATGCAGGTGGTTGAGTATAGCATATGCAGTGCATGAGGGG
GGGACTTGCCATGGCAACTCCGGCGAAGTGCGCCCGACGCCGGGACGGCGGCGGCGGCGGCGAC
GCGGCGGTGGCGTCGACGACGACGTGGTCCGATGGCAGCAGCAGCAGCGGCGGCTTGCCGTCGC
TCCCGGCGTCGCAGCACTGCGTGTTCGCCGGCGAGCACTTCCTGAGACGCTGTACGTCCTTGCT
TTGAAGAGGCTTTACGATGAAATCTTCAGCACCAGCATTCATGCATCTGTGTTTAAAAAAAGAT
TTTTTTTAAGAAAAAAAATCTTCTTATACTGCAGGATCACAGCAGTACTAGTACAGTACTAACA
GGATATCAGAGATCACGGGACAGCAATCAATGAACCACACAAATGTCGTGGATCTCTGTATCTG
ATACAGCATCTTCTCAGAGGTCGAACGCCCATTCGACCAAAGTGCGGATCATAATGGGAAGGCA
AGTACATGAACAGGCCAAGATGGGGTATTTACTGAAGCATTACTATTTCTCTTCCACTCCCTCG
GTTATATTTTAAATACAACCATAAATTTTCGTGTCTAACTTTGATCGTTCGTCTTATTTGAAAA
TTTTTTATAATTAGTATTTTTGTTGTAATGATATGATAAAACATGAATGGTACTTTATGCATGA
TTTATGTTTTTAAATTTTTTTTAAATAAGACAGATGATTAAAGTTGAGTATGAAAAAGTATGGC
TACACTTAAAATACGATAGATACGATAGAGGGAGTACAAATCTATGAAGCTTGTTAAATGGATG
GATGTATATAGCCATACGTATGTACAGTTCGCTGCTCAGTTGTACACTCGGTACAGTGTACTCC
TATTGTGCAGCAGGCAGAGGTATTGGGACCAAATTAAGACAGCTCCCCTTTTTTTTTTACTTGC
ACAGAAACAGATGCTGAAGGAAAAAAGAAAGAAAAAGGATGAAAGCCTCTCTGCCTCACCTGCT
GATCCTCTGGGGCTCGTTTTCCGACGACATGACGATCACTGGGATCGGCTTCAGAGGGCTCAGC
GCCTGCAAACATCCAATGAAGCCATGAGCCAATCACACATCAGGTTATTACTGGAACTAATTAC
TACTACTGCTAATTAGTACTAGGGACACCAAAATAGTAGTAGCAACAGCGCAAGTCTGAATTTC
TGCATTAACAGTATTTGTATTTATATTACCTTGATGGCTTTGAGAAGCTCATAACCAGTCATCT
CAGGCATGCAGTAGTCGGTGAGCACCATGTCGATGGCCTGCTCCTGCACATGATATTAAAAAGA
GTTTATTTAGCCATCCAATCACATCCTGGTTAGCTGTAATTACACCCAGCCGTGTCACTACCAC
TCCTGTGTTGAGCTCACAGGGCACACCAAGAATCAAACCCATGCCATTAACCAATCCCATTAAC
CCAAGCTTGGTGTCATCAAGACACCAGACAGCTCTGTCAGGCTGCTGTAAGACGGCGAGTTTTT
CTCTCTTTTTTAGTAGTATTTTTTTTCTTCTTCCTCTGCATGTCTCTCTCCCCCATGAAAAGAG
GCCACCTTTTGCTCCCAAAAGGCGGAGACGAGGAGGAACAGAAACCCTCACGCGCGCACGCGCG
CCGTACGGCCGGCGTACGGCCGGCGGTGCAGCGCCGCCGGCGAGAGGAGGAAAACAAAAATGGC
GTCGCCATGGGTTAATGATCTGATCCTCGTTTCTTGCAGGCTTGCAGCAGCAGCAGGGCATCGG
CGGCGATTATGGACGGTAATGGCGTTGGTTTAAGTG
Conservation Information
Conserved circRNAs osa_circ_023952
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021