Detail information of EPlOSAG00000039349_circ_ig.4


General Information
CircRNA Name EPlOSAG00000039349_circ_ig.4
ID in PlantcircBase osa_circ_001472
Alias NA
Organism Oryza sativa
Position chr1: 11033473-11037557  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000013235_circ_ig.2 EPlOSAG00000039349_circ_ig.1 EPlOSAG00000039349_circ_ig.2 EPlOSAG00000039349_circ_ig.3 EPlOSAG00000039349_circ_ig.5 EPlOSAG00000039349_circ_ig.6 EPlOSAG00000039349_circ_ig.7
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAGATCAATACCTTGTCATAGACTGGGATAAAATAGTATCCATTAGGGGCACACTGAGTGCT
TTCCTTAACCAAACCATCAATAGTACACAGCTCAACctgatcaagtctgtaatacccaagattg
tctgttacagctctcaactgaccatccacgataacattagcaccttccacaccagcaccatacc
catcaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATCAAGTCTGTAATACCCAAGATTGTCTGTTACAGCTCTCAACTGACCATCCACGATAACA
TTAGCACCTTCCACACCAGCACCATACCCATCAACAACACGCCCTCCAACAGAAAACCCAGTAA
CCTAGTAAGACATGAATGAGGAATCACTAGTCAGCTAGTGGAGAGAAGGTCCACTGTAAGGAGT
GAAAAAGACAAAATTGAATGTGTGACACTGATGAACAGATAAAAAAAAAGGAACATATCAAAAC
TAAGATGCTTAAGCAGCTGAAAGTTTGGAAATGTCAAGTCTACATCGAGCTGTCATGTAATCCA
CCATCTGCACCCAGTAAACCTTGAAATATATTTTTTTTCATTAAATGGGCCATACATCTCCATT
TCACATATCCGTTATTCAGCAGTTATGCACTAAAGCAGGTAGTTGACTTCAAATTATGTTTTTA
TCGGTGACACCACATGATAGATAGCCCTCTCTTTATTGTTGCCAACTACAGATTTGATCATAAC
TTCATAGTCCAAAGCATGGGACATAAAGCAACTTAAAGCATTACCTGGAACTTTTGGGGGATAG
TCATATGACTGTGCTCAACAGAAACAAGCAGTGAAGGGGGAGAGACATCAAAAACAGTATTTTC
CCCTTTGTAGTACGGCAACAGCTCATAGCTACCTGCAAATTTTGTAGTAAACAATGAACAGTTG
CATTTAAAAATCACCTCACACTCACAAGCATGCAGTACATACAAAATCATCACTTAGCAAACAA
ATTCCTGTACTAATCAAACATCGAACACGTTTAGTGACATACATTTTACACTCATGGCAATGGA
AGAGCAAATATTAAGAACTTTTACAATTTTTTACTAATCCGATGATACCTGTTGCATTCAACAT
TTTGAAATAAAAACACAAAGGGGGGGGGCAGATTCATCATATATGCCATTGAAAATTTACCTAT
TTCCTTATTTGTCACCCATTGTCCCACTGACATGAGAGCCTAGAGAGACATTAGTGGCAAATAA
GGGGTCGCACGAGTTTTCAGTGGCAAATGAGGAATAAAAATTGTATACAGACACAATGGTGTGC
AGTTCTCATATAGTAAGTGGCTAATAAAGATTTTACCATTAGCATTGCATGAGGACAAGTTGTG
CATGATCATGATCAAAATAGCGTCAATGTGCCAAAAATCACGGGGTTGGAAAATATCATCGTAT
GTGTCATTGACAGGTGGATCCAAGCACCACATGTCATTCTAACGTACGATGGTATTTTGCAACT
CATGTATCTTTATGATGGTATTTTCCAAATTCTCTTCTTCTTCAGGGATGATTATTGCTACTTA
AATGAGAAGCTGAGTGTAAAACTATTGCTTCCCCAAAAAGGGCATCGTAAGATGTGTCAAAAGG
ATGAATCAAAAACATATTAAATGAAGAGATTCTATGAACCAGTTATGATGCACTATGAATTTTA
GGCAGGTTGAATACATAACCAACTTACCACAAGGTAACGAACTAAACGTGAACTTTCCATCAGC
ACCAGATACTGCATGGCAAAGAGCACCTTCTCTGGGTGCATCACTAATACTTTGTGGACAAGGC
ACCTCTGTTACGTCATTTGAATATAAATAAAGGTGAACTCCCAAGATTGGATTTCCCTAGCATG
GAACATGCATGGAATAAGTCAATTTGCAAATTCCATGAACAAAGAGATAAAATAATTCAAAATG
ATTCTATTCAATATTATGCATTAGTTATGATGGGCTGATGGCACAATCACTTAGTTCCTTCAAT
ACCTGTGCAACTACAGAGCCATAAATATTATATCCAGATAGAAAGAAGACATCATCTGCAACAG
CATTTCCAAATCGCAAGTCCACCTACATGTAAAAACATGTACAGTTGTAACACAATACAAATGT
TGTGACAAAATCTAACAGCATATAAGCAAATATGAAATACTAACCTCTGATGAACCCCTTGTCT
CAATTTCATAGTTAGGATGAGAAGCACGCAATTTATAGCGCCCTGGACAAGAGTGAGGGTAAAC
ATAAAAAAGGTGTTAAGTATGAAAAATCTAACAACAGGACAAATCAAAAAGGTCTGAACAAGAT
ACATGGGGATATCTTGTGTATGTGGAGGTGTACACAGAACCCAATCAATATATTTTGTCAAACA
GAAAGTAAATTAGGCTGAGCTGGTGTCCCATGCTGCTAATAAGGCCAATACAGAGAGCTGAGTT
GGAAAGGTGGTAATTGGATAAAGGTAACATATCCTACCACATGGTCCACATGCTTACATAAGGT
TGAAAACCTAAGGGCATGTACAAAGGTATTAAATGAACCAGCCCATAGCACATCCACATCCCTT
CTTTATATAAAGCTAATGCCCACTAAACACCTAAAGCTCAATATGCAAGCATAGTATTTATTAG
CACTCCTAATTCCTAAAACCTGCATGCAAGCATGCCACATCAACACATTAAGCACACAAAGCTC
AACATGCAAGTATATAGTGATTATATCTACAATTTATTTCATTCTAAAATTAAACATACACATG
CTAAATCATCATTCTCAAATTATTTTCATAATATTTCAATCCAAATCATTTCATCATTTCTCCA
ATAACTAACATATATCCCGCACCAAAGCACGGGGCATCATCTAATAACTACTTAACTGAGATGG
AGTTGAAACTTGAAAGAAGGGGGAAAGAAAGTAGCTGTCTGTTCATGAAGAGACGGTTCAGACA
GTTTTCCATGAAATCTGTGTAGCTCGTATAATTGTGTTGGCTCGTAAAAGAGATCACTATTGTA
TTTGTTGTTTTTAGATTATTTGGAGTTTATTGGGCTTATCACTTGACTCAATTATTCTGCATGC
CGTAATAGGCTAATCGCATAAACTTTACAAGAAAATATAATTGGTAGAAGAGTGTAAATCAGTA
AATTACTTGTTCTAACATTTACAATGGAGTTTGAACAAAATGGAAAGATCACATCAATGGTACC
AGAAACGAAATCCACGTCATTAAATACATTATAGGGTACTTCCACTAGTCATGGATACATATTA
TTTTGCAGTCAAAACATTGTTTTTAAATATTTAGATTTGATACATGAAAATCATATGTATTTGT
CTTAAAAGTTACTCGATTATTCCCGTAGTATATTATGACTTTATAATGTTATATACATATATCA
TGATAGAGAATACTAGCAGTTAAAGTTGTGTTTTAGGGATGATGTCAAGATGGGGACATAGGAA
TTAAGCAGCATTCCTCACTAACTATGTATGCACGTATATGATAAAGTTTTCAATACATGAAGGA
TATTAAATAAAAAGCAAGTCAAACCTGGAATTATATTTGCAAATGAATATTCTCCTGTAGATGA
TGTTAAAGCAGAAGCAACTAACTCATCAGAGTTTGTCGATAGCTCAACTTTGACACCAGAAGGT
CCTCCATGTTTAGAGCAGCTCTTCCCACCAACAGCTCCCACTACTTTACCAGATATCATAAACC
TGCATGGTGTATTCACAGATGAAAACTTAAATGTGATAATTGTTCACAGGAAAACAATAAAGAA
AACAAAACCAAATGGTCAAAGAAACAGACCCAGTGAACTGAAAATTTATATCTGCATTGCCATT
ACATCCATTTTGATCGATGACAACAGGAACCTAAAATGTAAAGCGAACATTTAATAGGACAATA
ATGGTGATGAAAGCAAAGGAATATATGGCATATTTAGTTCAGACACAAACTTACAGTTTCAGGC
TTCCAAGACCACCCCTTGGGCCCCTTAACTCTGACCATGAATGAACCCTGTGGCGTGAAAACAA
CAAAAAGAACAGAATATTATCTTCCATATGATAATGCTGAGAATCTTGTCAGAGTAATAAGGTC
ATCTAGTTATGTTTTCTTTCTTAATTTTACGGAAGTTTCCAGAGCATTTATCAAGGCCAAAACC
CAAAATAAATGCTAAGCACAAGATCAATACCTTGTCATAGACTGGGATAAAATAGTATCCATTA
GGGGCACACTGAGTGCTTTCCTTAACCAAACCATCAATAGTACACAGCTCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.09790153
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017