Detail information of Os04g0433800_circ_g.3


General Information
CircRNA Name Os04g0433800_circ_g.3
ID in PlantcircBase osa_circ_023879
Alias Os_ciR852
Organism Oryza sativa
Position chr4: 21552328-21553465  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0433800
Parent gene annotation Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicas
e/ nucleic acid binding. (Os04t0433800-01)
Parent gene strand -
Alternative splicing Os04g0433800_circ_g.2 Os04g0433800_circ_g.4 Os04g0433800_circ_g.5
Support reads 32/5
Tissues root/shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0433800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAACCCTTTACCTGCAATAAATGCATGATCTGGTCTTGGATGAGCGATACGAGAGGAGAAAC
TACCAATGTAACGCCATTACAAATGAGTGCTGGAAGccttaatttagcagccactttctcacaa
tccatcctcgaaaggcaatatatgatgccgcattctttattatgatttgcatgtataaagttat
ggatatcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 132
Transcript exons: 21552328-21552372,21553379-21553465
CCTTAATTTAGCAGCCACTTTCTCACAATCCATCCTCGAAAGGCACTGCAATAAATGCATGATC
TGGTCTTGGATGAGCGATACGAGAGGAGAAACTACCAATGTAACGCCATTACAAATGAGTGCTG
GAAG

Transcript length: 624
Transcript exons: 21552328-21552463,21552540-21552691,21552765-21552885,21
553178-21553305,21553379-21553465
CCTTAATTTAGCAGCCACTTTCTCACAATCCATCCTCGAAAGGCAATATATGATGCCGCATTCT
TTATTATGATTTGCATGTATAAAGTTATGGATATCCTCGAGGCACTTCTTTGTCTTGGGCCATA
CAAAATACCTCAGATTTGGACGATTAAAACTTTGTCTGAAAATAATGCAGTTTGCAAGGCCTAG
AACTTGCACGACATCTTCCTTGACACTTGCAGTTGCTGTTGCAGTCAAGGCCAGGACTGGCGTC
TGCGGGAACTTCTGTTTTAAAATGCCTAGATGCTGGTAATCAGGTCGGAAATCATGACCCCACT
GGCTAACACAGTGGGCTTCATCAATGACAATTCTAGAGAGATGGCCTCGCGAATATAAATTTTC
CAATTGTCTCAACAGAGCATCACTCTTGGCTATCTTTTCAGGCGTAACATACAGTAACTTGTAC
GTGCATGTAGGAGACATTAATTCTCTTAATATCTCCTGCTGTTCTGACCACTCCATGCTGGCGC
TAAGGTAAGCTGCAGAAATATTTGCCTGCAATAAATGCATGATCTGGTCTTGGATGAGCGATAC
GAGAGGAGAAACTACCAATGTAACGCCATTACAAATGAGTGCTGGAAG

Genomic sequence CCTTAATTTAGCAGCCACTTTCTCACAATCCATCCTCGAAAGGCAATATATGATGCCGCATTCT
TTATTATGATTTGCATGTATAAAGTTATGGATATCCTCGAGGCACTTCTTTGTCTTGGGCCATA
CAAAATACCTGCAAAAGTTGGGCTGAGATGGTCTGGTGCAATTGGAGTTGAATGTCAATGTCTT
CTGAATTCTGATAGACTTACCTCAGATTTGGACGATTAAAACTTTGTCTGAAAATAATGCAGTT
TGCAAGGCCTAGAACTTGCACGACATCTTCCTTGACACTTGCAGTTGCTGTTGCAGTCAAGGCC
AGGACTGGCGTCTGCGGGAACTTCTGTTTTAAAATGCCTAGATGCTGATGGATAAAGAACTGGA
TTAAAAGGTTGTCAATTATTTAACATGAAAATCTGCTTCCTGACAGAAAGTACCTGGTAATCAG
GTCGGAAATCATGACCCCACTGGCTAACACAGTGGGCTTCATCAATGACAATTCTAGAGAGATG
GCCTCGCGAATATAAATTTTCCAATTGTCTCAACAGAGCATCACTCCTGTACTCAGGAAATTAA
TGTGAGTTAGGCACATGAATTGGCAAAGCACACGTCACAAAAGAAAGGACTAATTGTGTGAGAA
GCTAATACAAGCTAAAGGTGTTGAATCTTCATAAAGAAAAACAAAGAAATGTAACCAATAGTCC
AATACTAGTGATCTGGAAATGCGAACTGCTGCATAGTGACAGCAGGTCATTATGAGCTTACTTA
TACTATATCAGAAAAGACTACCTTTCAAATAGTCAAGAAATCATATAACATGACTACGAATCAA
CAGCAGAATTCCACTTACTTGGCTATCTTTTCAGGCGTAACATACAGTAACTTGTACGTGCATG
TAGGAGACATTAATTCTCTTAATATCTCCTGCTGTTCTGACCACTCCATGCTGGCGCTAAGGTA
AGCTGCAGAAATATTTGCCTGTGATAAACAACACGTGAGCAATTAGAAAATCATCAAGAAATAA
GTAGAAGGAAACAAAACAACCCTTTACCTGCAATAAATGCATGATCTGGTCTTGGATGAGCGAT
ACGAGAGGAGAAACTACCAATGTAACGCCATTACAAATGAGTGCTGGAAG
Conservation Information
Conserved circRNAs osi_circ_005468* osi_circ_014378
PMCS 0.40586827
Functional Information
Coding potential Y
Potential coding position 21553389-21552330(+)
21553393-21552397(+)
21553395-21552330(-)
Potential amino acid sequence MHDLVLDERYERRNYQCNAITNECWKP*(+)
MIWSWMSDTRGETTNVTPLQMSAGSLNLAATFSQSILERQYMMPHSLL*(+)
MHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGH
LSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCII
FRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLRLPALICNG
VTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAK
SDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATAS
VKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDC
EKVAAKLRLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSP
TCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQK
FPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHAN
HNKECGIIYCLSRMDCEKVAAKLRLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSAS
MEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWG
HDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWP
KTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLR(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017