Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os04g0433800_circ_g.3 |
ID in PlantcircBase | osa_circ_023879 |
Alias | Os_ciR852 |
Organism | Oryza sativa |
Position | chr4: 21552328-21553465 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os04g0433800 |
Parent gene annotation |
Similar to RECQ4A; ATP binding / ATP-dependent helicase/ helicas e/ nucleic acid binding. (Os04t0433800-01) |
Parent gene strand | - |
Alternative splicing | Os04g0433800_circ_g.2 Os04g0433800_circ_g.4 Os04g0433800_circ_g.5 |
Support reads | 32/5 |
Tissues | root/shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os04t0433800-01:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_005468* osi_circ_014378 |
PMCS | 0.40586827 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
21553389-21552330(+) 21553393-21552397(+) 21553395-21552330(-) |
Potential amino acid sequence |
MHDLVLDERYERRNYQCNAITNECWKP*(+) MIWSWMSDTRGETTNVTPLQMSAGSLNLAATFSQSILERQYMMPHSLL*(+) MHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGH LSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCII FRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLRLPALICNG VTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSPTCTYKLLYVTPEKIAK SDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQKFPQTPVLALTATATAS VKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHANHNKECGIIYCLSRMDC EKVAAKLRLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSASMEWSEQQEILRELMSP TCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWGHDFRPDYQHLGILKQK FPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWPKTKKCLEDIHNFIHAN HNKECGIIYCLSRMDCEKVAAKLRLPALICNGVTLVVSPLVSLIQDQIMHLLQANISAAYLSAS MEWSEQQEILRELMSPTCTYKLLYVTPEKIAKSDALLRQLENLYSRGHLSRIVIDEAHCVSQWG HDFRPDYQHLGILKQKFPQTPVLALTATATASVKEDVVQVLGLANCIIFRQSFNRPNLRYFVWP KTKKCLEDIHNFIHANHNKECGIIYCLSRMDCEKVAAKLR(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |