Detail information of AT2G43650_circ_g.10


General Information
CircRNA Name AT2G43650_circ_g.10
ID in PlantcircBase ath_circ_018193
Alias NA
Organism Arabidpsis thaliana
Position chr2: 18101432-18101746  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G43650
Parent gene annotation Putative uncharacterized protein At2g43650
Parent gene strand +
Alternative splicing AT2G43650_circ_g.1 AT2G43650_circ_g.2 AT2G43650_circ_g.3 AT2G43650_circ_g.4 AT2G43650_circ_g.5 AT2G43650_circ_g.6 AT2G43650_circ_g.7 AT2G43650_circ_g.8 AT2G43650_circ_g.9 AT2G43650_circ_g.11
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G43650.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTGTACACAACCTTGCTGATCTCTGTTTATTCAGCCGATGAAAATTGACAACGCAAGAGAA
GAAAAGAAGAAAAAAGGAGAGAAACGCAAGCACCAGatcaaagaacttgatgaagagcttcccc
ctggatttgaagagtccctagcaagaagtattgctaatggagcagtgcaaaaggtggttaaaga
agatcagc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 216
Transcript exons: 18101432-18101584,18101684-18101746
ATCAAAGAACTTGATGAAGAGCTTCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTA
ATGGAGCAGTGCAAAAGGTGGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGA
TAGAATCACACAAGACACAGCCAAGCCGATGAAAATTGACAACGCAAGAGAAGAAAAGAAGAAA
AAAGGAGAGAAACGCAAGCACCAG

Genomic sequence ATCAAAGAACTTGATGAAGAGCTTCCCCCTGGATTTGAAGAGTCCCTAGCAAGAAGTATTGCTA
ATGGAGCAGTGCAAAAGGTGGTTAAAGAAGATCAGCTCACTTCACCTGTTTCTGATTCAGTAGA
TAGAATCACACAAGACACAGCCAAGGTAGAAGTTAGGATCTTACTCGCTGTCACTCAAGTTAAT
CTCTTGTGAGCTATTTGACACTTTCTTTGTACACAACCTTGCTGATCTCTGTTTATTCAGCCGA
TGAAAATTGACAACGCAAGAGAAGAAAAGAAGAAAAAAGGAGAGAAACGCAAGCACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.321831905
Functional Information
Coding potential Y
Potential coding position 18101687-18101743(+)
Potential amino acid sequence MKIDNAREEKKKKGEKRKHQIKELDEELPPGFEESLARSIANGAVQKVVKEDQLTSPVSDSVDR
ITQDTAKPMKIDNAREEKKKKGEKRKHQIKELDEELPPGFEESLARSIANGAVQKVVKEDQLTS
PVSDSVDRITQDTAKPMKIDNAREEKKKKGEKRKHQIKELDEELPPGFEESLARSIANGAVQKV
VKEDQLTSPVSDSVDRITQDTAKPMKIDNAREEKKKKGEKRKHQ(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017