Detail information of AT2G43650_circ_g.6


General Information
CircRNA Name AT2G43650_circ_g.6
ID in PlantcircBase ath_circ_018189
Alias At_ciR1454
Organism Arabidpsis thaliana
Position chr2: 18100416-18100795  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G43650
Parent gene annotation Putative uncharacterized protein At2g43650
Parent gene strand +
Alternative splicing AT2G43650_circ_g.1 AT2G43650_circ_g.2 AT2G43650_circ_g.3 AT2G43650_circ_g.4 AT2G43650_circ_g.5 AT2G43650_circ_g.7 AT2G43650_circ_g.8 AT2G43650_circ_g.9 AT2G43650_circ_g.10 AT2G43650_circ_g.11
Support reads 12
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G43650.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATAAGAAAGAGAAGGGTGATAAGGATACACATGTTGAAGAGATCAAGAAAGACATAAACTC
TTTGTCAAAAGAAGAGCAAATGGATGTAGTATATAGatcctatcaagtgatgatgaagacatta
aagcggaagaagaagaggtcatacgactacgggcagaacaacttggatccataacagcagctga
tgctgggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 287
Transcript exons: 18100416-18100562,18100656-18100795
ATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAAGAAGAGGTCATACGACTACGGGCAG
AACAACTTGGATCCATAACAGCAGCTGATGCTGGGTTAGACGATGATAGTGAAGAAGATAGCGA
CAGAGAATTAACCATGGAGGAAATTTCTGACAAAGGTAAGCAGGCTACAAAATCCATCACAGAT
AAGAAAGAGAAGGGTGATAAGGATACACATGTTGAAGAGATCAAGAAAGACATAAACTCTTTGT
CAAAAGAAGAGCAAATGGATGTAGTATATAG

Genomic sequence ATCCTATCAAGTGATGATGAAGACATTAAAGCGGAAGAAGAAGAGGTCATACGACTACGGGCAG
AACAACTTGGATCCATAACAGCAGCTGATGCTGGGTTAGACGATGATAGTGAAGAAGATAGCGA
CAGAGAATTAACCATGGAGGTGGGTCATGGGTGTTACAAGTTACTATCATGTAGTTGAAAACTA
TCCTGTTGCTTAGATCATTGACGCACCATTCTGGTTTATGTTTGGCAGGAAATTTCTGACAAAG
GTAAGCAGGCTACAAAATCCATCACAGATAAGAAAGAGAAGGGTGATAAGGATACACATGTTGA
AGAGATCAAGAAAGACATAAACTCTTTGTCAAAAGAAGAGCAAATGGATGTAGTATATAG
Conservation Information
Conserved circRNAs NA
PMCS 0.24057678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015