Detail information of POPTR_0018s10710_circ_ag.1


General Information
CircRNA Name POPTR_0018s10710_circ_ag.1
ID in PlantcircBase pop_circ_004173
Alias Chr18:12643655-12648174
Organism Populus trichocarpa
Position chr18: 11597730-11602249  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0018s10710_circ_ag.2
Support reads 2,7,7,3,11
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   GT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATCCAATTCAACTCGCGTCCTGCAAATAGGACATGCAGAAACCTTGACAAGCCACGCATCCAC
ACATTTCCTATGAAACACATGACCACAGCCAACAAGggtttctacaccactgcccttgctttat
atcttcaagacaaaccacacatgaactttgatcagcagccgtttcaggtgtcgtcttagtcgag
aatctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCTACACCACTGCCCTTGCTTTATATCTTCAAGACAAACCACACATGAACTTTGATCAGC
AGCCGTTTCAGGTGTCGTCTTAGTCGAGAATCTGAATCTCGGGAGCTTCTTTAAGTCTTTGAGA
GGCAACCCCTTTGGGGGATTGGAGGATGGAGTCGAGTGGCGGTGGAGTGCGGCGGTGGGAATGA
GGAGGAGGATGGCGGCAACACCAAGGAGTACGAAAAAAAGGATGGTTATTGCGATCATTACTAT
GGCTTTCAGGACAAGAAAAATAAACTTCCGGTTTGGTTTTGGTGGTGCACCACCGTGGTGATGA
GGAGGAGGAGACATGGTTACAGATGGAAGTTAATGAACGAAAAGGAAATGGTCAGACTGAAAAG
GTTTTTGGTGTGACTCCAAAAATGGGGTCCAATTTATAGAATATGAGAGAAGAAGAAAGAGGAA
TGCGTTTTTTATTATTCCACTTTCTTCTTTCTGTGGGTAGAAAAGGGCGGCTATAGTTAGAACT
TAGAATGTCGATCTGATGTCGCAATGTGTTCGCATGCTGGTTTACGCGGAGGATCTGTCACCAT
TCTCACGCAAAACCTACGTGTAGTTTCTTCTGCGTTGGATGAGATGGACCTAGCTAGGTAGGTA
GGAGGTAGGTTCCTTTACAACAGTCCTTGTCATAAGAAAAAACAAAATGACAAGAAAACGCTAA
GTTATTCTATCCGTAGATCCATAGAATTGTAACAGGGCGTTCTTGTCTTGAATTATCTTTCTAA
AATCTTCATGATTTTTAATCAGATATTTCCTTAAGACGGCCACGGTTTTGTTATATAAAATATG
TACTCTTGATCGAATATACTAATGGATGGATAGATTGATATGCTGTCGCCGTCGCCGTCGCCGT
CGTTTTATGCATAAAACAACAGAAATAGAATTCAAATTGTTTAGTTTAGTTGGATGAGAATAAG
AATGATGATAATGAAGATAAACTTCGTAGCGAATTCCCTACGTTAATATACTTGAATGGTTATT
AACCAATTATTTCGTTCATTGTATTTCTTTTTAAATATAATTGTTGGTTGCAACAAAGTTATTG
TGTTTCAAAATTAATTTTAATTTTAAAATTAATCTTGATATAGTTTAAATTTAGAATTTAATGA
GTTATAAATTTAAAAGATTATTTTTTTAATTTTAATATATTCTTTAAAGTGTTAAAAAAATAAT
CTAGAGTTAGCCAAGAATATAATTTTAACTTTAAAGTTGATTAAATAACTTGTGCAAACTTTTG
AGGAATACATGTATATGTATAGTCGTGTACACACATATTTAGTGATGAGTTATACTTTCGAGAG
ACACGTATATAAAGGTGTTACCTATATAAATATATATTAACTTGTCGAGTAATTTAAGAGATTT
CACCCATAGTTTTTAAATCTGGTCTGGTGGCCGGCCCGGTTCAAGATTTAGATTTCAAGTTTTG
ATTGAGTCACCGGGTTTTGATCAGGTCGGCCGGGTCAATTTCTATTTAAAAAAAATTCAAAACG
GTGTCGTTTTAGAAAAAAAACAAAAGTCAACGGGTTGCAACCGGGTTACCAGGTCAACCTGTCG
GGTCACACCGGGTCATGATTTTTTCTATTTTTTCATCAACCCCGCCCGGTTCCAGCCTCGGGTC
CCAAGTCGACCCGCCGGGCCGGGCCGATTTCAAAACTATGATTTCACCCCATAAAAACACATGA
ATTATATTATTAAAAATCAAGGATCAATGTAAGATTATGCTATTCTTTTATATGAAGACAACTG
ATTAAATAAATTTACTCAATATAAAAATAAAATTGTAAACTCTTAACAGCACAAGGACCAAAGT
GTAATGTTATTCAAACTGGTCACCTGTCCCTTCAAGATCTGCCACCGTATATATATAGACAGAT
ATCTATGGGCGCTCCTCAATCGTTTGATGGGTTATGGCTCCAGTTTTGATGGGTCCCACGTGTC
ACAGAAAAGGATACGCTTAGGTGATTTGGGATTAACCAGTCAATTAATCATATGTTTTTTTATC
AACCAATATTAAATTAAATTAAAAATTAAAAATAAAACTAAAAAAAGATGTTGAATCCATGTAG
CTCTCCTCAGAGCACTGTACTCTCTGATTATTATTTTTTCCAGTCCCCCCCACGTTTTTTTTCC
ACAAAGATCCAAGCTTTAAACAACAATTCACCAGAAGCACATCGCAATGAAAATTTTAGAATGG
GAGGAGAGCAGATGCAACTACCAGTCAGTATTCTTTTCGAAAATCCAGCTTCATGTGAGAAAGA
ATCAAATTTTGAGATATCTGCGTTCTATCCAGCATGATATCTCTTTTTCTTCCATCCTATCAAC
AATCTTTTTAGAAAACAGGGTGATATTGAATGGTTCAAGAATCAAATTTCAAAATCCCTTTTTA
TTTGAACAAATCATATTGAATACTGGGATAAACTAGATGTTGCAAAATATTTCTTAAAAGGAGT
AGTAACCGAAGCTCAAGATTATATGACGCTAATTTTTGTATGGAAATTCAAGAAAGTGGCGGTT
CCCTAACAGGATCATCGTGTTTTTTGTATATTTTTGGCAAGTCCTGACAGGGTCTTTGTTAAAC
CAGCATGAAAAAAATCTTTATCCAATGAAGTAGCACGCCAAGCACTAAAATCCCAAGATTTTAC
ATGATATTCAGAGGCCATGGCATAGTATAATACAGTTTTTGCACTTCAGTTCAAAGGATCTGCA
CTGAACTAGTTTTTTTCGCCAAGGCCACTTACAAATGGGGAAGCCTCAAGAATCAAATTTCACT
ATAGGGAGAAGGAACCACAAAGGTTCGTTGCATAAAACCAAAGGAAACAAGATATCAAAGTTAT
GCAGTGACAACAAGAAAAGAAGGATTCCCCATTCCAACAATTAACTCCGCCATAAATTCTTGGA
AATGAACTGTATGACTTAGAAGCCACAAGAATATGCATAACACAGCAAGGAGAATCATTCCCCA
AGCACCAATCCATTAATGCCTAAAAAATAAAAGAAATGGAATGCAGCGTGTGATTTCACTACTC
AACCACAGCATCGTATTGTACCCACTTCGCAACTGGCCACAGCGTTAGATCATGACCCAAAATC
CAGGCAAACAATAAGTTTAGCAAAAGGCAAAAGCAGAGTAGGGGAATCTCGTAGAATATATCAA
GAGTAGTCACAACAAAGACCAACATAAAAGCAAGCTCAAGCTCGACATATTGGCAATTATCTAT
TACAGTAATCAAAATCCAGCATCAAACAGCAGATTCAAAAACCAGCAACAAAAGGAAATCACCA
AGATGAACAAATAAGAAGAAATGAGATCAAATCAAAACAGGTGTATTCAAAGTCAAATCTAATT
TCTCTATGTAACAGTCAAAAATACTAGAGAGAGAGAGATGATTATCTCAGTCAAAAGATATGCA
AGGCTGCTGCTTTCTCTCGTATAAGAAAAGCTAATCTGATGTTGTAAAATTAGTTGGTGACGAA
AGAAGCAGACTGGTAAGAATTTCATGATGTTATGCAGCTTATATTGATGGTATCTTTTTTCTTT
TGAACTCCAAGCTATTTGCTGTTCTGTATTTCTGTTTGCTTGGATCGAAACACTTAAGAACACA
GAAATATCCTAGGAGTAGGTGGATAGCCGCTTAAAAGCAACAATTACTCTAATGAAATGGAATA
AGTTTTTGTTGAAGTATGAAAGTATCATGTAGTGTTTTATTACCACTACATTGAGGTAATTATT
GACTTCTTAAGAGGTTATGAAATGGGGTTAATAGATTTTAATGTTACTCTAATTTGATTGAGTA
AAGAAAATATTCGTGAGCAACCATTTCATGTACTGGGAAATAAAAATTTAGCTTGTCCTCATCA
ATTTGCAGAATTCCTACTGTATGCAGCCGCTAAATTCATTTCGATTATGAATAAGTAAATCCAT
TTGGAAAAGAATTGATTTCTTCCTAATAAATTCATCAAGCACAGACAACCTTTCATGCGGTCTC
CACAGACAATTCAAAGGAAAGTAATTGAGCTCTGACCTCTTAAAAGCACCAACCTTTCATTTCT
GACAGATCAAAGTAGTCGCGTTTGAATTACAATCAAGAATCCAACCACCAAAATCAGATTTCGT
ATTCAAAACAGAGCATATATCATGAAGAGAATTATCGACCGAACAAGCATGCTGCAATTCATGA
TCAAATACATGGATTTGAAAGTTGATACCATTCGTCTATTTATAAAACCAAAAATCTAATGACG
TACATACATAAAAAGAAGAGGGGATCAAAATTTAACAAGAACTTACAATTAGATAGAGAAAAAG
AAAATGCTACCAAACCCTCAATTCATTTCTCCAAACAAAGTCCCACAATGGCCTATCTTTTACG
CCCTGATCCAATTCAACTCGCGTCCTGCAAATAGGACATGCAGAAACCTTGACAAGCCACGCAT
CCACACATTTCCTATGAAACACATGACCACAGCCAACAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.090722946
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020