Detail information of POPTR_0018s10710_circ_ag.2


General Information
CircRNA Name POPTR_0018s10710_circ_ag.2
ID in PlantcircBase pop_circ_004174
Alias Chr18:12643729-12648248
Organism Populus trichocarpa
Position chr18: 11597804-11602323  JBrowse»
Reference genome Populus trichocarpa genome v3.0
Type   ag-circRNA
Identification method CIRI2; circRNA_finder
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing POPTR_0018s10710_circ_ag.1
Support reads 3
Tissues leaf; cambium; xylem
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAACACATGACCACAGCCAACAAGGTTTCGACACCACTGCCCTTGCTTTATCTCTTCAAGAC
AAACCACACATGAACTTTGATCAGCACCCGTTTCGGggtgtcgtcttagtcgagaatctgaatc
tcgggagcttctttaagtctttgagaggcaacccctttgggggattggaggatggagtcgagtg
gcggtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGTCGTCTTAGTCGAGAATCTGAATCTCGGGAGCTTCTTTAAGTCTTTGAGAGGCAACCCCT
TTGGGGGATTGGAGGATGGAGTCGAGTGGCGGTGGAGTGCGGCGGTGGGAATGAGGAGGAGGAT
GGCGGCAACACCAAGGAGTACGAAAAAAAGGATGGTTATTGCGATCATTACTATGGCTTTCAGG
ACAAGAAAAATAAACTTCCGGTTTGGTTTTGGTGGTGCACCACCGTGGTGATGAGGAGGAGGAG
ACATGGTTACAGATGGAAGTTAATGAACGAAAAGGAAATGGTCAGACTGAAAAGGTTTTTGGTG
TGACTCCAAAAATGGGGTCCAATTTATAGAATATGAGAGAAGAAGAAAGAGGAATGCGTTTTTT
ATTATTCCACTTTCTTCTTTCTGTGGGTAGAAAAGGGCGGCTATAGTTAGAACTTAGAATGTCG
ATCTGATGTCGCAATGTGTTCGCATGCTGGTTTACGCGGAGGATCTGTCACCATTCTCACGCAA
AACCTACGTGTAGTTTCTTCTGCGTTGGATGAGATGGACCTAGCTAGGTAGGTAGGAGGTAGGT
TCCTTTACAACAGTCCTTGTCATAAGAAAAAACAAAATGACAAGAAAACGCTAAGTTATTCTAT
CCGTAGATCCATAGAATTGTAACAGGGCGTTCTTGTCTTGAATTATCTTTCTAAAATCTTCATG
ATTTTTAATCAGATATTTCCTTAAGACGGCCACGGTTTTGTTATATAAAATATGTACTCTTGAT
CGAATATACTAATGGATGGATAGATTGATATGCTGTCGCCGTCGCCGTCGCCGTCGTTTTATGC
ATAAAACAACAGAAATAGAATTCAAATTGTTTAGTTTAGTTGGATGAGAATAAGAATGATGATA
ATGAAGATAAACTTCGTAGCGAATTCCCTACGTTAATATACTTGAATGGTTATTAACCAATTAT
TTCGTTCATTGTATTTCTTTTTAAATATAATTGTTGGTTGCAACAAAGTTATTGTGTTTCAAAA
TTAATTTTAATTTTAAAATTAATCTTGATATAGTTTAAATTTAGAATTTAATGAGTTATAAATT
TAAAAGATTATTTTTTTAATTTTAATATATTCTTTAAAGTGTTAAAAAAATAATCTAGAGTTAG
CCAAGAATATAATTTTAACTTTAAAGTTGATTAAATAACTTGTGCAAACTTTTGAGGAATACAT
GTATATGTATAGTCGTGTACACACATATTTAGTGATGAGTTATACTTTCGAGAGACACGTATAT
AAAGGTGTTACCTATATAAATATATATTAACTTGTCGAGTAATTTAAGAGATTTCACCCATAGT
TTTTAAATCTGGTCTGGTGGCCGGCCCGGTTCAAGATTTAGATTTCAAGTTTTGATTGAGTCAC
CGGGTTTTGATCAGGTCGGCCGGGTCAATTTCTATTTAAAAAAAATTCAAAACGGTGTCGTTTT
AGAAAAAAAACAAAAGTCAACGGGTTGCAACCGGGTTACCAGGTCAACCTGTCGGGTCACACCG
GGTCATGATTTTTTCTATTTTTTCATCAACCCCGCCCGGTTCCAGCCTCGGGTCCCAAGTCGAC
CCGCCGGGCCGGGCCGATTTCAAAACTATGATTTCACCCCATAAAAACACATGAATTATATTAT
TAAAAATCAAGGATCAATGTAAGATTATGCTATTCTTTTATATGAAGACAACTGATTAAATAAA
TTTACTCAATATAAAAATAAAATTGTAAACTCTTAACAGCACAAGGACCAAAGTGTAATGTTAT
TCAAACTGGTCACCTGTCCCTTCAAGATCTGCCACCGTATATATATAGACAGATATCTATGGGC
GCTCCTCAATCGTTTGATGGGTTATGGCTCCAGTTTTGATGGGTCCCACGTGTCACAGAAAAGG
ATACGCTTAGGTGATTTGGGATTAACCAGTCAATTAATCATATGTTTTTTTATCAACCAATATT
AAATTAAATTAAAAATTAAAAATAAAACTAAAAAAAGATGTTGAATCCATGTAGCTCTCCTCAG
AGCACTGTACTCTCTGATTATTATTTTTTCCAGTCCCCCCCACGTTTTTTTTCCACAAAGATCC
AAGCTTTAAACAACAATTCACCAGAAGCACATCGCAATGAAAATTTTAGAATGGGAGGAGAGCA
GATGCAACTACCAGTCAGTATTCTTTTCGAAAATCCAGCTTCATGTGAGAAAGAATCAAATTTT
GAGATATCTGCGTTCTATCCAGCATGATATCTCTTTTTCTTCCATCCTATCAACAATCTTTTTA
GAAAACAGGGTGATATTGAATGGTTCAAGAATCAAATTTCAAAATCCCTTTTTATTTGAACAAA
TCATATTGAATACTGGGATAAACTAGATGTTGCAAAATATTTCTTAAAAGGAGTAGTAACCGAA
GCTCAAGATTATATGACGCTAATTTTTGTATGGAAATTCAAGAAAGTGGCGGTTCCCTAACAGG
ATCATCGTGTTTTTTGTATATTTTTGGCAAGTCCTGACAGGGTCTTTGTTAAACCAGCATGAAA
AAAATCTTTATCCAATGAAGTAGCACGCCAAGCACTAAAATCCCAAGATTTTACATGATATTCA
GAGGCCATGGCATAGTATAATACAGTTTTTGCACTTCAGTTCAAAGGATCTGCACTGAACTAGT
TTTTTTCGCCAAGGCCACTTACAAATGGGGAAGCCTCAAGAATCAAATTTCACTATAGGGAGAA
GGAACCACAAAGGTTCGTTGCATAAAACCAAAGGAAACAAGATATCAAAGTTATGCAGTGACAA
CAAGAAAAGAAGGATTCCCCATTCCAACAATTAACTCCGCCATAAATTCTTGGAAATGAACTGT
ATGACTTAGAAGCCACAAGAATATGCATAACACAGCAAGGAGAATCATTCCCCAAGCACCAATC
CATTAATGCCTAAAAAATAAAAGAAATGGAATGCAGCGTGTGATTTCACTACTCAACCACAGCA
TCGTATTGTACCCACTTCGCAACTGGCCACAGCGTTAGATCATGACCCAAAATCCAGGCAAACA
ATAAGTTTAGCAAAAGGCAAAAGCAGAGTAGGGGAATCTCGTAGAATATATCAAGAGTAGTCAC
AACAAAGACCAACATAAAAGCAAGCTCAAGCTCGACATATTGGCAATTATCTATTACAGTAATC
AAAATCCAGCATCAAACAGCAGATTCAAAAACCAGCAACAAAAGGAAATCACCAAGATGAACAA
ATAAGAAGAAATGAGATCAAATCAAAACAGGTGTATTCAAAGTCAAATCTAATTTCTCTATGTA
ACAGTCAAAAATACTAGAGAGAGAGAGATGATTATCTCAGTCAAAAGATATGCAAGGCTGCTGC
TTTCTCTCGTATAAGAAAAGCTAATCTGATGTTGTAAAATTAGTTGGTGACGAAAGAAGCAGAC
TGGTAAGAATTTCATGATGTTATGCAGCTTATATTGATGGTATCTTTTTTCTTTTGAACTCCAA
GCTATTTGCTGTTCTGTATTTCTGTTTGCTTGGATCGAAACACTTAAGAACACAGAAATATCCT
AGGAGTAGGTGGATAGCCGCTTAAAAGCAACAATTACTCTAATGAAATGGAATAAGTTTTTGTT
GAAGTATGAAAGTATCATGTAGTGTTTTATTACCACTACATTGAGGTAATTATTGACTTCTTAA
GAGGTTATGAAATGGGGTTAATAGATTTTAATGTTACTCTAATTTGATTGAGTAAAGAAAATAT
TCGTGAGCAACCATTTCATGTACTGGGAAATAAAAATTTAGCTTGTCCTCATCAATTTGCAGAA
TTCCTACTGTATGCAGCCGCTAAATTCATTTCGATTATGAATAAGTAAATCCATTTGGAAAAGA
ATTGATTTCTTCCTAATAAATTCATCAAGCACAGACAACCTTTCATGCGGTCTCCACAGACAAT
TCAAAGGAAAGTAATTGAGCTCTGACCTCTTAAAAGCACCAACCTTTCATTTCTGACAGATCAA
AGTAGTCGCGTTTGAATTACAATCAAGAATCCAACCACCAAAATCAGATTTCGTATTCAAAACA
GAGCATATATCATGAAGAGAATTATCGACCGAACAAGCATGCTGCAATTCATGATCAAATACAT
GGATTTGAAAGTTGATACCATTCGTCTATTTATAAAACCAAAAATCTAATGACGTACATACATA
AAAAGAAGAGGGGATCAAAATTTAACAAGAACTTACAATTAGATAGAGAAAAAGAAAATGCTAC
CAAACCCTCAATTCATTTCTCCAAACAAAGTCCCACAATGGCCTATCTTTTACGCCCTGATCCA
ATTCAACTCGCGTCCTGCAAATAGGACATGCAGAAACCTTGACAAGCCACGCATCCACACATTT
CCTATGAAACACATGACCACAGCCAACAAGGTTTCGACACCACTGCCCTTGCTTTATCTCTTCA
AGACAAACCACACATGAACTTTGATCAGCACCCGTTTCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.090722946
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Song et al., 2020