Detail information of BGIOSGA033986_circ_igg.1


General Information
CircRNA Name BGIOSGA033986_circ_igg.1
ID in PlantcircBase osi_circ_009027
Alias Chr11:19167145_19169291(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13642603-13644749  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033986_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCTGCAGTATGCTTCTTAAAGACAAACTTCTGATCCTTACCGCTGATGTACTCTTGAATAAC
AATTGGTCGTCATGTTTATAGTTGCGACTGAACACCctgctggtaataaggcttttgccagctc
gctagagtcaggtcggcgccgtagcccgtctccgttagatgcacacatattgttcagcagagtt
gcagagac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTGGTAATAAGGCTTTTGCCAGCTCGCTAGAGTCAGGTCGGCGCCGTAGCCCGTCTCCGTT
AGATGCACACATATTGTTCAGCAGAGTTGCAGAGACATATATGTACTCATCATCTTCGAGCATT
TTAGCGATACCCTTGATATTCTTGTTGCCTTGTTGCCCCAAGATAGATGCGCAGTTCTCCGCGT
TCTCCTTTGCCAGCATCGCCAGTGCTTCCCCTGCCACCATGCCGGTTGATTCATGTTTATTAAG
AAACGCGTCCATCAACGTGGGGATTATCATGTGTATGCTCCCAATCTCCTGCCTTTTTCCTTCA
TCCATACAGAGCTTGGCAATGATCTCTATGGCCGGCCGCCTGAGCTCCGGGCTGCCGGTGTCAT
CTAGCACGTCTGCGAGGTTTACCACCAGCAAGGGGTTGTCGGAAATATTCCTCCGTATATCGAT
GCCGGCCTTCCCCCCGGTGCTCGCGAGAATCTTCACCAAATTTAGTGATTGTGCGAGCAATATT
CCCTGATCTTGATGTGCTGTGAGATTGGTGTAGCCTATAATTTTTGAGATGAGGTCCGTAGCTT
TGCTGATTTCTGCACAGTTGTGAATATCATAGGTAAGCCTGCCAAGAATTTTCATGCCGATTTC
AGGGAGCAAATCTTGATTGGCCGAGGGCTCCTCTTCTGGAATCGAGAACCAGTGTGCCCAACAG
CTCCCGTCCCTCTCCCTAGCTCTTTCCAGTGCAATGGCGGCTTGCATTATTGGTTGATCCTGTG
CATCAAGGAGTGAAGAAATCAACTGAACTGCACCGGGGATCCCAGCAACCCTGATCCTACCAGC
AAGCACAGCGACGACCTTGGAGGCAAACAGTCTGGTCTCTTCGTCAGCCTTAATCGTCCAACCT
AGCATGCCGATTAATCTGGGCACCGCCTTCTCGGAGGCGATGACCTTTGAGGCGACCTCTGATT
CTGAACTGCCTGAATCGGGCATCCCTTCTCTATATCGCAGAAAGCCGTGCAGAATACGTAGCCC
AGCAAGTCGCTTTTCCCTTGAGCTGGAGTTGAGGGACTCGATAGCGAAGGAGACAAGATCCATT
TCCTCTGGCTTAATCACGCTGCCTTCCAAACACTTGTCGTAGGCATGGTCGTAGTATAGGTCGA
CACACTTCTTACCCCACTTGCCCTTGAAACTGCAAAGATGCACAAGCCCTCTGCGGGGGACGAA
GGAGAAGAGCCCGCAGATGCATGCCAGTAAGTATATCCCCCCCTGGGAAATCATCAGTGCGTAG
AATACTACCAAGGACTCGACAAGATTCGCATCGTCAGGATGTTGATAATCTGTTTTAACCGGAT
TGAACAGGCGCAGAGATGGCAACACGATACGTGCAACAGCCGCGGGAATCTGGAGGTTGCCAAT
AAACAGCAGCACCAATCCCACGGCTGTGCCTGTGCTGATGATTGGGCCTGAGGCAAAGTTAGAG
AATTTCACCAAAAAGAACACCGAGAACAATAGGATAAATGCCACATCAAACAAGCGGGCGAAGC
AGCTGTTTACAGGGGACTGCAGGCTGCCAAGGGATAGAACAAGCACGGTTACTGACGACGTTCC
GGACGACACGGAGAGTAGAACTGGTTGTTGATTTATGCAGTCCACACCGTATATGCTCACAAAA
GCTGGAAGTACGATAGCCAGCATCTTACCGCAGCCCAGCAGCCAGCGGCCAGAAGGTCTATTTA
CCAGGTCCACGATGATGGGAGGCCTCCTGTTGAGAAATATCACTGACAACGCAAGTAGTAACCC
ATTGGCGAATGCGACCTTTCCGAAAGGATCTGAGAAATGGAATATTACGGACACACAGAAATGA
ATTACCACAGCCACCAATAGACCGAACAGCCACAACTGCTTGTTGCTTTGCAGCCAGCTCACTA
TCTCCGGAAGGCCTCCAAGGACTATAATTACCAGCAGGAACACTGTCAGAGCAGGGATTGCCAC
GGGGGGCCATGGTACAATAGTGGCCAGGCTAAAGATCGGCAGCATTGTATTCCAGTACTCCCGC
CGCTGCAGTATGCTTCTTAAAGACAAACTTCTGATCCTTACCGCTGATGTACTCTTGAATAACA
ATTGGTCGTCATGTTTATAGTTGCGACTGAACACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021