Detail information of BGIOSGA033986_circ_igg.2


General Information
CircRNA Name BGIOSGA033986_circ_igg.2
ID in PlantcircBase osi_circ_003154
Alias 11:13642604|13644749
Organism Oryza sativa ssp. indica
Position chr11: 13642604-13644749  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA033986_circ_igg.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGCTGCAGTATGCTTCTTAAAGACAAACTTCTGATCCTTACCGCTGATGTACTCTTGAATAAC
AATTGGTCGTCATGTTTATAGTTGCGACTGAACACCtgctggtaataaggcttttgccagctcg
ctagagtcaggtcggcgccgtagcccgtctccgttagatgcacacatattgttcagcagagttg
cagagaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGCTGGTAATAAGGCTTTTGCCAGCTCGCTAGAGTCAGGTCGGCGCCGTAGCCCGTCTCCGTTA
GATGCACACATATTGTTCAGCAGAGTTGCAGAGACATATATGTACTCATCATCTTCGAGCATTT
TAGCGATACCCTTGATATTCTTGTTGCCTTGTTGCCCCAAGATAGATGCGCAGTTCTCCGCGTT
CTCCTTTGCCAGCATCGCCAGTGCTTCCCCTGCCACCATGCCGGTTGATTCATGTTTATTAAGA
AACGCGTCCATCAACGTGGGGATTATCATGTGTATGCTCCCAATCTCCTGCCTTTTTCCTTCAT
CCATACAGAGCTTGGCAATGATCTCTATGGCCGGCCGCCTGAGCTCCGGGCTGCCGGTGTCATC
TAGCACGTCTGCGAGGTTTACCACCAGCAAGGGGTTGTCGGAAATATTCCTCCGTATATCGATG
CCGGCCTTCCCCCCGGTGCTCGCGAGAATCTTCACCAAATTTAGTGATTGTGCGAGCAATATTC
CCTGATCTTGATGTGCTGTGAGATTGGTGTAGCCTATAATTTTTGAGATGAGGTCCGTAGCTTT
GCTGATTTCTGCACAGTTGTGAATATCATAGGTAAGCCTGCCAAGAATTTTCATGCCGATTTCA
GGGAGCAAATCTTGATTGGCCGAGGGCTCCTCTTCTGGAATCGAGAACCAGTGTGCCCAACAGC
TCCCGTCCCTCTCCCTAGCTCTTTCCAGTGCAATGGCGGCTTGCATTATTGGTTGATCCTGTGC
ATCAAGGAGTGAAGAAATCAACTGAACTGCACCGGGGATCCCAGCAACCCTGATCCTACCAGCA
AGCACAGCGACGACCTTGGAGGCAAACAGTCTGGTCTCTTCGTCAGCCTTAATCGTCCAACCTA
GCATGCCGATTAATCTGGGCACCGCCTTCTCGGAGGCGATGACCTTTGAGGCGACCTCTGATTC
TGAACTGCCTGAATCGGGCATCCCTTCTCTATATCGCAGAAAGCCGTGCAGAATACGTAGCCCA
GCAAGTCGCTTTTCCCTTGAGCTGGAGTTGAGGGACTCGATAGCGAAGGAGACAAGATCCATTT
CCTCTGGCTTAATCACGCTGCCTTCCAAACACTTGTCGTAGGCATGGTCGTAGTATAGGTCGAC
ACACTTCTTACCCCACTTGCCCTTGAAACTGCAAAGATGCACAAGCCCTCTGCGGGGGACGAAG
GAGAAGAGCCCGCAGATGCATGCCAGTAAGTATATCCCCCCCTGGGAAATCATCAGTGCGTAGA
ATACTACCAAGGACTCGACAAGATTCGCATCGTCAGGATGTTGATAATCTGTTTTAACCGGATT
GAACAGGCGCAGAGATGGCAACACGATACGTGCAACAGCCGCGGGAATCTGGAGGTTGCCAATA
AACAGCAGCACCAATCCCACGGCTGTGCCTGTGCTGATGATTGGGCCTGAGGCAAAGTTAGAGA
ATTTCACCAAAAAGAACACCGAGAACAATAGGATAAATGCCACATCAAACAAGCGGGCGAAGCA
GCTGTTTACAGGGGACTGCAGGCTGCCAAGGGATAGAACAAGCACGGTTACTGACGACGTTCCG
GACGACACGGAGAGTAGAACTGGTTGTTGATTTATGCAGTCCACACCGTATATGCTCACAAAAG
CTGGAAGTACGATAGCCAGCATCTTACCGCAGCCCAGCAGCCAGCGGCCAGAAGGTCTATTTAC
CAGGTCCACGATGATGGGAGGCCTCCTGTTGAGAAATATCACTGACAACGCAAGTAGTAACCCA
TTGGCGAATGCGACCTTTCCGAAAGGATCTGAGAAATGGAATATTACGGACACACAGAAATGAA
TTACCACAGCCACCAATAGACCGAACAGCCACAACTGCTTGTTGCTTTGCAGCCAGCTCACTAT
CTCCGGAAGGCCTCCAAGGACTATAATTACCAGCAGGAACACTGTCAGAGCAGGGATTGCCACG
GGGGGCCATGGTACAATAGTGGCCAGGCTAAAGATCGGCAGCATTGTATTCCAGTACTCCCGCC
GCTGCAGTATGCTTCTTAAAGACAAACTTCTGATCCTTACCGCTGATGTACTCTTGAATAACAA
TTGGTCGTCATGTTTATAGTTGCGACTGAACACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021