Detail information of AT2G05380_circ_g.2


General Information
CircRNA Name AT2G05380_circ_g.2
ID in PlantcircBase ath_circ_012848
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1966817-1967568  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method in-house script
Parent gene AT2G05380
Parent gene annotation glycine-rich protein 3 short isoform
Parent gene strand +
Alternative splicing AT2G05380_circ_g.1
Support reads 4
Tissues leaf
Exon boundary   No-No
Splicing signals   AC-TA
Number of exons covered AT2G05380.1:2
AT2G05380.3:2
AT2G05380.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAATAGATATTAAGTAGTGCACAATTGCAAGAGCTAAAGTATATCTTTGATATACTGTGGTG
TTTTGGACAGGCACGGTGAAGTCAGAGAGTGAGGAAttcatcacaagttttaagcagtatttgt
aagaaaatggcttccaagactttgcttcttttgggtctctttgcatttcttttcatcgtctcag
aaatggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCATCACAAGTTTTAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGGT
CTCTTTGCATTTCTTTTCATCGTCTCAGAAATGGCTGCCGCGGGTACGTGTTATATATATTTCA
GTCTACTTCATACATCCAAGGCTAATTAAACCTAAACTAACGTACCGATATTAGATATTTTCAA
ACTATTTCGTCAATAGTAGTTACAAAATATATTCACTTATACAGAAGTGGAAATATACATATAT
ATCTCAAACTAAAACAAATACAAATAGAAACTTGTATATATGTTTAGCAGTGAAAGTAATTACG
TTTCTTTTTCTAATAATATGGATGATATATTCCCATAAATAATTCTCAATCTCGTAATCTTGGT
CTTAGCGATCTTAATTCATTTTCGGTTGATCTCTCAACAGTTTTAAATCTAGAAAGTTGGTTTG
AACCATGGTCAATTATTAGGACTTGCTAAGTCAAAAGACTCGTAAGAAAAGACACTTAAGTCAA
AACATGAATCCGTGTTACTCGTATATATCAAACAATCTCCATTATTTATGGTTTGCACAAATTT
TATATGTATCTTATATCTAACGTTTTAACTTATTTAAAAAGAATTTACAGATCTGAAATTTAAT
AGAAATTTATTTTTAAATAGATATTAAGTAGTGCACAATTGCAAGAGCTAAAGTATATCTTTGA
TATACTGTGGTGTTTTGGACAGGCACGGTGAAGTCAGAGAGTGAGGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.112720246
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Dou et al., 2017