Detail information of AT2G05380_circ_g.1


General Information
CircRNA Name AT2G05380_circ_g.1
ID in PlantcircBase ath_circ_012847
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1966816-1966923  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method PcircRNA_finder
Parent gene AT2G05380
Parent gene annotation glycine-rich protein 3 short isoform
Parent gene strand +
Alternative splicing AT2G05380_circ_g.2
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-TT
Number of exons covered AT2G05380.2:1
AT2G05380.3:1
AT2G05380.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTTTTGGGTCTCTTTGCATTTCTTTTCATCGTCTCAGAAATGGCTGCCGCGGattcatcaca
agttttaagcagtatttgtaagaaaatggcttccaagactttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCATCACAAGTTTTAAGCAGTATTTGTAAGAAAATGGCTTCCAAGACTTTGCTTCTTTTGGG
TCTCTTTGCATTTCTTTTCATCGTCTCAGAAATGGCTGCCGCGG
Conservation Information
Conserved circRNAs NA
PMCS 0.179089506
Functional Information
Coding potential Y
Potential coding position 1966851-1966920(+)
Potential amino acid sequence MASKTLLLLGLFAFLFIVSEMAAADSSQVLSSICKKMASKTLLLLGLFAFLFIVSEMAAADSSQ
VLSSICKKMASKTLLLLGLFAFLFIVSEMAAADSSQVLSSICKKMASKTLLLLGLFAFLFIVSE
MAAA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017