Plant Circular RNA Database

Detail information of Os02g0120100_circ_g.19

			
						 General Information
					
						CircRNA Name
						Os02g0120100_circ_g.19
					
						ID in PlantcircBase
						osa_circ_012823
					
						Alias
						Os_ciR3329
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 1054154-1056007  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os02g0120100						
					
						Parent gene annotation
						
							ATMRK serine/threonine protein kinase-like domain containing pro
tein. (Os02t0120100-01);Similar to ATP binding protein. (Os02t01
20100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0120100_circ_g.2 Os02g0120100_circ_g.3 Os02g0120100_circ_g.4 Os02g0120100_circ_g.5 Os02g0120100_circ_g.6 Os02g0120100_circ_g.7 Os02g0120100_circ_g.8 Os02g0120100_circ_g.9 Os02g0120100_circ_g.10 Os02g0120100_circ_g.11 Os02g0120100_circ_g.12 Os02g0120100_circ_g.13 Os02g0120100_circ_g.14 Os02g0120100_circ_g.15 Os02g0120100_circ_g.16 Os02g0120100_circ_g.17 Os02g0120100_circ_g.18 Os02g0120100_circ_g.20 Os02g0120100_circ_g.21 Os02g0120100_circ_g.22 Os02g0120100_circ_g.23 						
					
						Support reads
						3/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0120100-01:4

General Information
CircRNA Name	Os02g0120100_circ_g.19
ID in PlantcircBase	osa_circ_012823
Alias	Os_ciR3329
Organism	Oryza sativa
Position	chr2: 1054154-1056007 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os02g0120100
Parent gene annotation	ATMRK serine/threonine protein kinase-like domain containing pro tein. (Os02t0120100-01);Similar to ATP binding protein. (Os02t01 20100-02)
Parent gene strand	-
Alternative splicing	Os02g0120100_circ_g.2 Os02g0120100_circ_g.3 Os02g0120100_circ_g.4 Os02g0120100_circ_g.5 Os02g0120100_circ_g.6 Os02g0120100_circ_g.7 Os02g0120100_circ_g.8 Os02g0120100_circ_g.9 Os02g0120100_circ_g.10 Os02g0120100_circ_g.11 Os02g0120100_circ_g.12 Os02g0120100_circ_g.13 Os02g0120100_circ_g.14 Os02g0120100_circ_g.15 Os02g0120100_circ_g.16 Os02g0120100_circ_g.17 Os02g0120100_circ_g.18 Os02g0120100_circ_g.20 Os02g0120100_circ_g.21 Os02g0120100_circ_g.22 Os02g0120100_circ_g.23
Support reads	3/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0120100-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGATCATGCATACATTTGTCTTGCCAAGTGGTTGGTATGAACCGGCTCCATCCCAAGCTCAGA
ACAATCATCCATATCACCATCAAGAATCCTAGAAACcccaaggtgccaaccagtgacaacaaat
acatccaatgagtaaccatcacttgttgaaaatgcatgcgcttcttggatgtcaagaccaagct
cactaagc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CCCAAGGTGCCAACCAGTGACAACAAATACATCCAATGAGTAACCATCACTTGTTGAAAATGCA
TGCGCTTCTTGGATGTCAAGACCAAGCTCACTAAGCAAGCAAGTCAGCTGCAAGTGTATGAAAG
GCAAAGTGTAAGAATCAAAACAATTGCTGACATAAGTCCTGTATAAAATTGCCTTGAAGTTCAC
ATTAAACAGATTTGTAATGTTTTTTTAATCTTTTTTTCTAAATAAATATGTCCATTTATTTTTA
CTAATGATTTTCCTAACTAGCTACTTGTCAGCTTTTGAATTTCCTTCGCTTTGTTAAGATTGTA
TTGAAAGAAGTATGCCTACCTGACTAAGGACCTTTGGCTTATCAGTTGTTGCAAAAGTTATCTC
ATGCATTGGCCTGCAAGATTCAGAATATAGCGAGAATTAATCAACTAGAATGAGAATATATAGA
ATCCAAGTATTAATCAACTATTTGCATAATCCTAATGAAAATGCCCATAAATACTTCCTCCGTT
TCACAATGTAAGTCATTCTAGCATTTCCCACATCATGTCTAGATTCATTAACATCAATATGAAT
GTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGGAATAAAGGCTTAAGTTGGAAAAAT
GAACTACTCCCACCAATTATGAGTACTTTTGACAATTTCATAATCCACTCACTACATGATCAAA
CCAGCGCATAACAAAGAAGCTCATGCGTGGCATCGGCTTTTTGTGAAATGTCTTGTACATCTAA
ACAAGTATGCAAATGCAATATTGCCAGAGAAAGTACCATATTCGGAAAGGAAATTCTGCATATC
ATGGTTTTGCAGCTAACTGTTAGTAACAACTAATCCACTGATGCTATCATTTGTTAAAAAATAG
GCCACAGAGGCATGCATTCTTCACAAGGTAAAATATGCGATTTTCTGGTTGTAACACAATATAC
CATGTTAATTAATTGATATAGAGAAGTATCAAAAACAGTTTTTAAAAGGGAATCGCAACATGCC
GACATGCCAACCTTGTAAGGTAGTAGTACAAGACTACAAGCTAGTGCTAAGCACGCTATGATTG
TACAGAATGGCACATGAACCAAAAGAACCAAAGACAAATACAGTGGGCTCCTCTGAAACACGGG
ATTGAGAAAACAAAGGAATAGGAAAAACACAGAATTTCGATAGGAATTCAAACGCAAAATAGAG
GATTGTAAAACACAGGAAAAATTCAAAAATTGAATGAGAGAGATAGACTCATAGAAAACTTTCC
ATGAGGTTGGACCTCATGTTAAAAATCCTCCAAAACTTGTATGGAATAGAGCATTCCTTAAGAA
TTTCATAGGATTCAACAGTTTTCAATCATTTGTTTCAAAGGGCCAGATAGGAAAAAAAACCTAT
AGGATTTGAATCTTACAAAAATCCTATGTTTTTCATTCAAATCAAAGGGGCCCTAAACTCAAAA
TAAAGCGAGGTACACGTGAACTGAAAAGGGGAATTATCTACCTGGAAATGAGATGAACACTGCT
ATCTTCATCATTGTTACTGCTCCTTAGATTAGCCTCACTCGCCTCGAGCGCAAGTGCCTCTAAG
TTGGAGCAAGAACCAAAGGCAGGAGGGGGATGAACCCTGAAACGATTTGTGTAGTCACCATTAC
TCCATTAGCGTGCATAAAAGACAAGAACAGCCAAGGAGACACATGCATGAAAGTAAACGAACTT
CATGTGCATATAGATAGATAGATAGATAGATCATGCATACATTTGTCTTGCCAAGTGGTTGGTA
TGAACCGGCTCCATCCCAAGCTCAGAACAATCATCCATATCACCATCAAGAATCCTAGAAAC
						
					

			
		

Sequences
Splice junction sequence	TAGATCATGCATACATTTGTCTTGCCAAGTGGTTGGTATGAACCGGCTCCATCCCAAGCTCAGA ACAATCATCCATATCACCATCAAGAATCCTAGAAACcccaaggtgccaaccagtgacaacaaat acatccaatgagtaaccatcacttgttgaaaatgcatgcgcttcttggatgtcaagaccaagct cactaagc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CCCAAGGTGCCAACCAGTGACAACAAATACATCCAATGAGTAACCATCACTTGTTGAAAATGCA TGCGCTTCTTGGATGTCAAGACCAAGCTCACTAAGCAAGCAAGTCAGCTGCAAGTGTATGAAAG GCAAAGTGTAAGAATCAAAACAATTGCTGACATAAGTCCTGTATAAAATTGCCTTGAAGTTCAC ATTAAACAGATTTGTAATGTTTTTTTAATCTTTTTTTCTAAATAAATATGTCCATTTATTTTTA CTAATGATTTTCCTAACTAGCTACTTGTCAGCTTTTGAATTTCCTTCGCTTTGTTAAGATTGTA TTGAAAGAAGTATGCCTACCTGACTAAGGACCTTTGGCTTATCAGTTGTTGCAAAAGTTATCTC ATGCATTGGCCTGCAAGATTCAGAATATAGCGAGAATTAATCAACTAGAATGAGAATATATAGA ATCCAAGTATTAATCAACTATTTGCATAATCCTAATGAAAATGCCCATAAATACTTCCTCCGTT TCACAATGTAAGTCATTCTAGCATTTCCCACATCATGTCTAGATTCATTAACATCAATATGAAT GTGGGAAATACTAGAATGACTTACATTGTGAAACGGAGGGAATAAAGGCTTAAGTTGGAAAAAT GAACTACTCCCACCAATTATGAGTACTTTTGACAATTTCATAATCCACTCACTACATGATCAAA CCAGCGCATAACAAAGAAGCTCATGCGTGGCATCGGCTTTTTGTGAAATGTCTTGTACATCTAA ACAAGTATGCAAATGCAATATTGCCAGAGAAAGTACCATATTCGGAAAGGAAATTCTGCATATC ATGGTTTTGCAGCTAACTGTTAGTAACAACTAATCCACTGATGCTATCATTTGTTAAAAAATAG GCCACAGAGGCATGCATTCTTCACAAGGTAAAATATGCGATTTTCTGGTTGTAACACAATATAC CATGTTAATTAATTGATATAGAGAAGTATCAAAAACAGTTTTTAAAAGGGAATCGCAACATGCC GACATGCCAACCTTGTAAGGTAGTAGTACAAGACTACAAGCTAGTGCTAAGCACGCTATGATTG TACAGAATGGCACATGAACCAAAAGAACCAAAGACAAATACAGTGGGCTCCTCTGAAACACGGG ATTGAGAAAACAAAGGAATAGGAAAAACACAGAATTTCGATAGGAATTCAAACGCAAAATAGAG GATTGTAAAACACAGGAAAAATTCAAAAATTGAATGAGAGAGATAGACTCATAGAAAACTTTCC ATGAGGTTGGACCTCATGTTAAAAATCCTCCAAAACTTGTATGGAATAGAGCATTCCTTAAGAA TTTCATAGGATTCAACAGTTTTCAATCATTTGTTTCAAAGGGCCAGATAGGAAAAAAAACCTAT AGGATTTGAATCTTACAAAAATCCTATGTTTTTCATTCAAATCAAAGGGGCCCTAAACTCAAAA TAAAGCGAGGTACACGTGAACTGAAAAGGGGAATTATCTACCTGGAAATGAGATGAACACTGCT ATCTTCATCATTGTTACTGCTCCTTAGATTAGCCTCACTCGCCTCGAGCGCAAGTGCCTCTAAG TTGGAGCAAGAACCAAAGGCAGGAGGGGGATGAACCCTGAAACGATTTGTGTAGTCACCATTAC TCCATTAGCGTGCATAAAAGACAAGAACAGCCAAGGAGACACATGCATGAAAGTAAACGAACTT CATGTGCATATAGATAGATAGATAGATAGATCATGCATACATTTGTCTTGCCAAGTGGTTGGTA TGAACCGGCTCCATCCCAAGCTCAGAACAATCATCCATATCACCATCAAGAATCCTAGAAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.111328326

Conservation Information
Conserved circRNAs	NA
PMCS	0.111328326

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1055784-1054189(+)
1055985-1054156(-)
1054220-1055751(-)
						
						Potential amino acid sequence
						
							MNHLSCQVVGMNRLHPKLRTIIHITIKNPRNPKVPTSDNKYIQ*(+)
MDDCSELGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPM
HEITFATTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDD
CSELGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEI
TFATTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDDCSE
LGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEITFA
TTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDDCSELGM
EPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEITFATTD
KPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLG(-)
MHFQQVMVTHWMYLLSLVGTLGFLGFLMVIWMIVLSLGWSRFIPTTWQDKWFIPLLPLVLAPT*
(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1055784-1054189(+) 1055985-1054156(-) 1054220-1055751(-)
Potential amino acid sequence	MNHLSCQVVGMNRLHPKLRTIIHITIKNPRNPKVPTSDNKYIQ(+) MDDCSELGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPM HEITFATTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDD CSELGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEI TFATTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDDCSE LGMEPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEITFA TTDKPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLGVSRILDGDMDDCSELGM EPVHTNHLARQMVHPPPAFGSCSNLEALALEASEANLRSSNNDEDSSVHLISRPMHEITFATTD KPKVLSQLTCLLSELGLDIQEAHAFSTSDGYSLDVFVVTGWHLG(-) MHFQQVMVTHWMYLLSLVGTLGFLGFLMVIWMIVLSLGWSRFIPTTWQDKWFIPLLPLVLAPT (-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0120100_circ_g.19

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