Detail information of Os01g0563000_circ_g.7


General Information
CircRNA Name Os01g0563000_circ_g.7
ID in PlantcircBase osa_circ_002243
Alias NA
Organism Oryza sativa
Position chr1: 21425450-21426198  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0563000
Parent gene annotation Hypothetical conserved gene. (Os01t0563000-01);Peptidyl-prolyl c
is-trans isomerase, FKBP-type domain containing protein. (Os01t0
563000-02);Hypothetical conserved gene. (Os01t0563000-03);Hypoth
etical conserved gene. (Os01t0563000-04);Hypothetical conserved
gene. (Os01t0563000-05);Hypothetical conserved gene. (Os01t05630
00-06)
Parent gene strand +
Alternative splicing Os01g0563000_circ_igg.1 Os01g0563000_circ_igg.2 Os01g0563000_circ_igg.3 Os01g0563000_circ_igg.4 Os01g0563000_circ_g.1 Os01g0563000_circ_g.2 Os01g0563000_circ_g.3 Os01g0563000_circ_g.4 Os01g0563000_circ_g.5 Os01g0563000_circ_g.6 Os01g0563000_circ_g.8 Os01g0563000_circ_g.9 Os01g0563000_circ_g.10 Os01g0563000_circ_g.11 Os01g0563000_circ_g.12 Os01g0563000_circ_g.13 Os01g0563000_circ_g.14
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0563000-02:3
Os01t0563000-04:3
Os01t0563000-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGATACGGCGAATTGGGGAAGACCAAGCAATTGCCAAGAAAACTCTAAGGATAGGGAACTCAC
AGAGGATACACACACAAAGTCAAGCTGTGGTGAAAGtgaaatacgacgcatgcctgatggatgg
aacttcagtgtccaaatctgaaggtgttgaattcagccttaccgacggtaggagaacttctttt
tccctgct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 246
Transcript exons: 21425450-21425514,21426018-21426198
TGAAATACGACGCATGCCTGATGGATGGAACTTCAGTGTCCAAATCTGAAGGTGTTGAATTCAG
CGAACAAGGAAGACCTTCTCAAGGAGAGGAAGCTGCTGTGCCCCCAGATGCAACTCTTTATGTG
CACCTCCTATTTGTGTGCTGGATACGGCGAATTGGGGAAGACCAAGCAATTGCCAAGAAAACTC
TAAGGATAGGGAACTCACAGAGGATACACACACAAAGTCAAGCTGTGGTGAAAG

Transcript length: 262
Transcript exons: 21425450-21425524,21426012-21426198
TGAAATACGACGCATGCCTGATGGATGGAACTTCAGTGTCCAAATCTGAAGGTGTTGAATTCAG
CCTTACCGACGTTCGGTGAACAAGGAAGACCTTCTCAAGGAGAGGAAGCTGCTGTGCCCCCAGA
TGCAACTCTTTATGTGCACCTCCTATTTGTGTGCTGGATACGGCGAATTGGGGAAGACCAAGCA
ATTGCCAAGAAAACTCTAAGGATAGGGAACTCACAGAGGATACACACACAAAGTCAAGCTGTGG
TGAAAG

Transcript length: 348
Transcript exons: 21425450-21425524,21425626-21425706,21426007-21426198
TGAAATACGACGCATGCCTGATGGATGGAACTTCAGTGTCCAAATCTGAAGGTGTTGAATTCAG
CCTTACCGACGGCTTCTTCTGTCCTGCATTTGCACATGCTGTGCATACTATGAAAGAAGGAGAG
GAAGCAGTACTAATTGTGAAACCAAAATATGCTTTCGGTGAACAAGGAAGACCTTCTCAAGGAG
AGGAAGCTGCTGTGCCCCCAGATGCAACTCTTTATGTGCACCTCCTATTTGTGTGCTGGATACG
GCGAATTGGGGAAGACCAAGCAATTGCCAAGAAAACTCTAAGGATAGGGAACTCACAGAGGATA
CACACACAAAGTCAAGCTGTGGTGAAAG

Genomic sequence TGAAATACGACGCATGCCTGATGGATGGAACTTCAGTGTCCAAATCTGAAGGTGTTGAATTCAG
CCTTACCGACGGTAGGAGAACTTCTTTTTCCCTGCTCTTTATATTTTTTTTGTCAGCACGCTTG
AACATGAGATGATTTCAGTATTAATTTCTAACAAAATTGATGCTCCAGGCTTCTTCTGTCCTGC
ATTTGCACATGCTGTGCATACTATGAAAGAAGGAGAGGAAGCAGTACTAATTGTGAAACCAAAA
TGTAAGCAACAATTTACCAAAATCATGCCGCACTAGTATAAATCTTGATGCAGCAGTATATTAA
CTTGGTTACGCATATGCACGTGTATGTACTCTCTCTGTCCCAAAATATAGCAACCTAGGATAAG
TCTAGAAGTACGAACGTGGACATACCCTACGTCCACATTCGTAGTACTAGGATGGGTCTAATCC
CGTCCTAAGTTGTTGTATTTTGAGACGGAGGTAATATGCATGTATGTGTAGACGTCCTCTCATT
TCATTATAAGTATGTAAGCACTGATGATCGGTCTCTCTGTTCTAGATGCTTTCGGTGAACAAGG
AAGACCTTCTCAAGGAGAGGAAGCTGCTGTGCCCCCAGATGCAACTCTTTATGTGCACCTCCTA
TTTGTGTGCTGGATACGGCGAATTGGGGAAGACCAAGCAATTGCCAAGAAAACTCTAAGGATAG
GGAACTCACAGAGGATACACACACAAAGTCAAGCTGTGGTGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.319479217
Functional Information
Coding potential Y
Potential coding position 21425471-21426195(+)
21425466-21425664(-)
Potential amino acid sequence MDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPP
DATLYVHLLFVCWIRRIGEDQAIAKKTLRIGNSQRIHTQSQAVVKVKYDACLMDGTSVSKSEGV
EFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVC
WIRRIGEDQAIAKKTLRIGNSQRIHTQSQAVVKVKYDACLMDGTSVSKSEGVEFSLTDGFFCPA
FAHAVHTMKEGEEAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIA
KKTLRIGNSQRIHTQSQAVVKVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGE
EAVLIVKPKYAFGEQGRPSQGEEAAVPPDATLYVHLLFVCWIRRIGEDQAIAKKTLRIGNSQRI
HTQSQAVVK(+)
MRRISLSPQLDFVCVSSVSSLSLEFSWQLLGLPQFAVSSTQIGGAHKELHLGAQQLPLLEKVFL
VHRKHILVSQLVLLPLLLS*(-)
Sponge-miRNAs osa-miR530-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017