Plant Circular RNA Database

Detail information of Os06g0175500_circ_g.13

			
						 General Information
					
						CircRNA Name
						Os06g0175500_circ_g.13
					
						ID in PlantcircBase
						osa_circ_029868
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 3803250-3805337  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os06g0175500						
					
						Parent gene annotation
						
							Epsin-like, N-terminal domain containing protein. (Os06t0175500-
01);Similar to predicted protein. (Os06t0175500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os06g0175500_circ_g.14 Os06g0175500_circ_g.15 Os06g0175500_circ_g.16 Os06g0175500_circ_g.17 Os06g0175500_circ_g.18 Os06g0175500_circ_g.19 Os06g0175500_circ_g.20 Os06g0175500_circ_g.21 Os06g0175500_circ_g.22 Os06g0175500_circ_g.23 Os06g0175500_circ_g.24 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0175500-01:7
Os06t0175500-02:2

General Information
CircRNA Name	Os06g0175500_circ_g.13
ID in PlantcircBase	osa_circ_029868
Alias	NA
Organism	Oryza sativa
Position	chr6: 3803250-3805337 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os06g0175500
Parent gene annotation	Epsin-like, N-terminal domain containing protein. (Os06t0175500- 01);Similar to predicted protein. (Os06t0175500-02)
Parent gene strand	-
Alternative splicing	Os06g0175500_circ_g.14 Os06g0175500_circ_g.15 Os06g0175500_circ_g.16 Os06g0175500_circ_g.17 Os06g0175500_circ_g.18 Os06g0175500_circ_g.19 Os06g0175500_circ_g.20 Os06g0175500_circ_g.21 Os06g0175500_circ_g.22 Os06g0175500_circ_g.23 Os06g0175500_circ_g.24
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0175500-01:7 Os06t0175500-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TATGGGACCTAGATCTGCCATAATTGATAAGCTCTTCACGAAAAGTGGGATCGACCTCTCGAAG
GGCGCGATGTATGACAATTAATGTCTTCAATGCAACctgttcgatttttaagaacttctcacca
cgcccaatgtgtatcgttttacacacttcataaaactctgatagtctttcagcctgtgcaacaa
atttaaga

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGTTCGATTTTTAAGAACTTCTCACCACGCCCAATGTGTATCGTTTTACACACTTCATAAAAC
TCTGATAGTCTTTCAGCCTGTGCAACAAATTTAAGAAATTAAAAGGTGAAGCAGCAACAGTGCC
CTAAATGTTCTTATTTCAACATAATTCAACGATTAATATCAGTGGTTCAGAACTTCTGTTTTAG
ACAGATCAACATCAACAGAGCTGATGATGCTGAAGTGAAAAAAAAACCTTGTGCTCTAAGTTTA
ATTTCATATTCCATCACAGATATGATACCTAAATTTTAATTAGAGACAAGGTTGCTTAAAAGTG
CACATAGCTAATCCTCGATCAAAGGAGAGACCATGGAGGAAAGCAAGATGCTCAGATGGATTGT
TATCTGCCTCTGTCCTACTGTTTTTTATCACTTTGTCATGAATCAAACATTGAAGGGGGGAAAA
ACTGGTCAGGGATAATAAAACAACATAATAGTGTAAATAGATTTGATCTATTCACAGCAATTAA
GTGAATTATCTCATACATTCTTCAATCGATCAGCTTCTAAGTTTCTGAAGCCCTAACACATACC
CAAGTCCTTAATTAATTAAACTTAAGAAAGAACCTTGATTTTTATTGCTACATGCAAGTGAAAA
TAATCCACTGAACAAATTCATTAATGGATCAACAGTAGAGGGACAGAACTTCACCTGGTTAGTT
GCTCTTTTGTATATATCAAGTGCCCTAACAGCATCACTTCTTTGCATCTCAAAGAACTGTAATA
GAGAATAATCCGTAGGTTAGATGAGAAAAGTAAAGAAATATCGCTAGCGAATAGCAGATTTTAC
AAACTTATCTGGAATGACTAGAATAACTAATAAGAAAACTCACCTTGTCAACCAGATTAATTGT
ACCATCACTAATAGCAGTGTAGATCTTAACACTTTCCAGAGCAACCTTCCAGTAATGCACAAGC
AAAGTCAGCATTCATGCCAAGACCATCATGTTGTGCACTTAAAATGAAACAAGCATGCTAACTC
ATGCTACTTACCATTGAAAGTGCGTGCTGGATTATGACATTGTAAGATGATGCCCCTTGTGGCT
ACAAAAATAATATTCAGTAATTCAAATTTAACCTGACAGTGGAACATGAAGATGGAATGTGGTG
AAATTTCAAATCATATGTAGGCAAAAACTAATTACCTGGCAAGCAAGGAGCCGAAAAAGAAGTT
GCTGTAATGCTGGCAGATGATCAAGCAAATCACCAGTTTCAAGATCCCGAGTTTTCTGCAGAGA
CCAGAATTTTCAGAAAGTTAGAAAGAATACCGTTGGCAACATGGCACTTGTAATCTCATCTCTC
ATGATAAAGTTTCAATTACATAAATCAATGTTCCATGTCCCTATGCGGTGGCATGCCTGTCAAC
TCTTCTGGAAGATATCTGGATATTCTCTAGCAATAGGTAACCTTCTGTAGTTCGGAAACTTCCA
TGTGGTGCACTAGGGCTCCTTTCCAAGGGGGATTAACTATGGTTTTGAAATTCACTTTCTCTCC
TTTAGAGTTTTCTAAGGTGATAGATCTACTTCCACAATCTACTTCCTCAGAGTCTTCCAGGAGA
AAAGGAGGAAACCTTAAAATTGGAACTTACAAGGTAGTTATGAAGTTTAAACACAGTTTCCTTC
CAGCAAAATTACATTTAAGTTTTAAAGAAATAAAAATTTGATAAAACCTCGCATAAGCAAGAGT
AGTAATTGGATTACATACCGGAGGATCTGTCTCCACATCATACTTCAGCACTCGGAAACATTCA
AGTCTCTCTTCTAAATATAAAGCATAAGTGCGTATCCAAGCAGAAAAATCCCAAGCTGAACAAG
ATAAGAGTAAATAGTCATTATAGTTCAGAGTTAGAATGTCTAATACAGCTATAAAAGTGACAAC
ACTAGTAATAAAATGTCAATTAGTACCTCCTGCACTAGAATCATCCTTAAAGTAGGCCAAGTTT
AGCATATGGGACCTAGATCTGCCATAATTGATAAGCTCTTCACGAAAAGTGGGATCGACCTCTC
GAAGGGCGCGATGTATGACAATTAATGTCTTCAATGCAAC
						
					

			
		

Sequences
Splice junction sequence	TATGGGACCTAGATCTGCCATAATTGATAAGCTCTTCACGAAAAGTGGGATCGACCTCTCGAAG GGCGCGATGTATGACAATTAATGTCTTCAATGCAACctgttcgatttttaagaacttctcacca cgcccaatgtgtatcgttttacacacttcataaaactctgatagtctttcagcctgtgcaacaa atttaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGTTCGATTTTTAAGAACTTCTCACCACGCCCAATGTGTATCGTTTTACACACTTCATAAAAC TCTGATAGTCTTTCAGCCTGTGCAACAAATTTAAGAAATTAAAAGGTGAAGCAGCAACAGTGCC CTAAATGTTCTTATTTCAACATAATTCAACGATTAATATCAGTGGTTCAGAACTTCTGTTTTAG ACAGATCAACATCAACAGAGCTGATGATGCTGAAGTGAAAAAAAAACCTTGTGCTCTAAGTTTA ATTTCATATTCCATCACAGATATGATACCTAAATTTTAATTAGAGACAAGGTTGCTTAAAAGTG CACATAGCTAATCCTCGATCAAAGGAGAGACCATGGAGGAAAGCAAGATGCTCAGATGGATTGT TATCTGCCTCTGTCCTACTGTTTTTTATCACTTTGTCATGAATCAAACATTGAAGGGGGGAAAA ACTGGTCAGGGATAATAAAACAACATAATAGTGTAAATAGATTTGATCTATTCACAGCAATTAA GTGAATTATCTCATACATTCTTCAATCGATCAGCTTCTAAGTTTCTGAAGCCCTAACACATACC CAAGTCCTTAATTAATTAAACTTAAGAAAGAACCTTGATTTTTATTGCTACATGCAAGTGAAAA TAATCCACTGAACAAATTCATTAATGGATCAACAGTAGAGGGACAGAACTTCACCTGGTTAGTT GCTCTTTTGTATATATCAAGTGCCCTAACAGCATCACTTCTTTGCATCTCAAAGAACTGTAATA GAGAATAATCCGTAGGTTAGATGAGAAAAGTAAAGAAATATCGCTAGCGAATAGCAGATTTTAC AAACTTATCTGGAATGACTAGAATAACTAATAAGAAAACTCACCTTGTCAACCAGATTAATTGT ACCATCACTAATAGCAGTGTAGATCTTAACACTTTCCAGAGCAACCTTCCAGTAATGCACAAGC AAAGTCAGCATTCATGCCAAGACCATCATGTTGTGCACTTAAAATGAAACAAGCATGCTAACTC ATGCTACTTACCATTGAAAGTGCGTGCTGGATTATGACATTGTAAGATGATGCCCCTTGTGGCT ACAAAAATAATATTCAGTAATTCAAATTTAACCTGACAGTGGAACATGAAGATGGAATGTGGTG AAATTTCAAATCATATGTAGGCAAAAACTAATTACCTGGCAAGCAAGGAGCCGAAAAAGAAGTT GCTGTAATGCTGGCAGATGATCAAGCAAATCACCAGTTTCAAGATCCCGAGTTTTCTGCAGAGA CCAGAATTTTCAGAAAGTTAGAAAGAATACCGTTGGCAACATGGCACTTGTAATCTCATCTCTC ATGATAAAGTTTCAATTACATAAATCAATGTTCCATGTCCCTATGCGGTGGCATGCCTGTCAAC TCTTCTGGAAGATATCTGGATATTCTCTAGCAATAGGTAACCTTCTGTAGTTCGGAAACTTCCA TGTGGTGCACTAGGGCTCCTTTCCAAGGGGGATTAACTATGGTTTTGAAATTCACTTTCTCTCC TTTAGAGTTTTCTAAGGTGATAGATCTACTTCCACAATCTACTTCCTCAGAGTCTTCCAGGAGA AAAGGAGGAAACCTTAAAATTGGAACTTACAAGGTAGTTATGAAGTTTAAACACAGTTTCCTTC CAGCAAAATTACATTTAAGTTTTAAAGAAATAAAAATTTGATAAAACCTCGCATAAGCAAGAGT AGTAATTGGATTACATACCGGAGGATCTGTCTCCACATCATACTTCAGCACTCGGAAACATTCA AGTCTCTCTTCTAAATATAAAGCATAAGTGCGTATCCAAGCAGAAAAATCCCAAGCTGAACAAG ATAAGAGTAAATAGTCATTATAGTTCAGAGTTAGAATGTCTAATACAGCTATAAAAGTGACAAC ACTAGTAATAAAATGTCAATTAGTACCTCCTGCACTAGAATCATCCTTAAAGTAGGCCAAGTTT AGCATATGGGACCTAGATCTGCCATAATTGATAAGCTCTTCACGAAAAGTGGGATCGACCTCTC GAAGGGCGCGATGTATGACAATTAATGTCTTCAATGCAAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.122426185

Conservation Information
Conserved circRNAs	NA
PMCS	0.122426185

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3805313-3803307(+)
3805323-3803948(+)
3805240-3803252(-)
						
						Potential amino acid sequence
						
							MTINVFNATCSIFKNFSPRPMCIVLHTS*(+)
MSSMQPVRFLRTSHHAQCVSFYTLHKTLIVFQPG*(+)
MLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLETGDLLDHLPA
LQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFEMQRSDAVRAL
DIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDPTFREELINYG
RSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLETGDLL
DHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFEMQRSD
AVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDPTFREE
LINYGRSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLE
TGDLLDHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFE
MQRSDAVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDP
TFREELINYGRSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPK
TRDLETGDLLDHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLV
DKFFEMQRSDAVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQ(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3805313-3803307(+) 3805323-3803948(+) 3805240-3803252(-)
Potential amino acid sequence	MTINVFNATCSIFKNFSPRPMCIVLHTS(+) MSSMQPVRFLRTSHHAQCVSFYTLHKTLIVFQPG(+) MLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLETGDLLDHLPA LQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFEMQRSDAVRAL DIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDPTFREELINYG RSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLETGDLL DHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFEMQRSD AVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDPTFREE LINYGRSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPKTRDLE TGDLLDHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLVDKFFE MQRSDAVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQVALKTLIVIHRALREVDP TFREELINYGRSRSHMLNLAYFKDDSSAGAWDFSAWIRTYALYLEERLECFRVLKYDVETDPPK TRDLETGDLLDHLPALQQLLFRLLACQPQGASSYNVIIQHALSMVALESVKIYTAISDGTINLV DKFFEMQRSDAVRALDIYKRATNQAERLSEFYEVCKTIHIGRGEKFLKIEQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os06g0175500_circ_g.13

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