Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0303200_circ_g.3 |
ID in PlantcircBase | osa_circ_001481 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 11213559-11216132 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0303200 |
Parent gene annotation |
Conserved hypothetical protein. (Os01t0303200-01) |
Parent gene strand | + |
Alternative splicing | Os01g0303200_circ_g.1 Os01g0303200_circ_g.2 Os01g0303200_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0303200-01:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.114363287 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
11213648-11213647(+) 11216101-11213612(+) 11214406-11216089(-) |
Potential amino acid sequence |
MMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPNFTAADALRLTGVG RNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLVNFTIEEFKKLSEEETAT IDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKGLWITASENDYNGILVLLVECA GKGSTMRK*(+) MCLFTLTTALKDCGLLHPKTITMEYLFCS*(+) MVRSSKLGRYSLQDDTGIMQDSSGGISSFPHSTPLPCTLYEQNKYSIVIVFGCSNPQSFKAVVR VNRHIKIH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |