Detail information of Os01g0303200_circ_g.3


General Information
CircRNA Name Os01g0303200_circ_g.3
ID in PlantcircBase osa_circ_001481
Alias NA
Organism Oryza sativa
Position chr1: 11213559-11216132  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0303200
Parent gene annotation Conserved hypothetical protein. (Os01t0303200-01)
Parent gene strand +
Alternative splicing Os01g0303200_circ_g.1 Os01g0303200_circ_g.2 Os01g0303200_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0303200-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTCCTATGTTCTATTTGACCCAAAGGTCATAGATGGCCTTTATAAAAGAGGTTTAGTGTATT
TTGATGTGCCTGTTTACCCTGACGACCGCTTTAAAGgattgtggattactgcatccgaaaacga
ttacaatggaatacttgttttgctcgtagagtgtgcagggaaggggagtactatgaggaaatga
tgaaatac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTGTGGATTACTGCATCCGAAAACGATTACAATGGAATACTTGTTTTGCTCGTAGAGTGTGC
AGGGAAGGGGAGTACTATGAGGAAATGATGAAATACCTCCGGAGGAATCTTGCAGTATGTTCCT
GAATACTACCTCTTGCATGGTACCATTTTGAGATAATCCATGAAATGCCATTGACAAGCATCTA
AGTCCCAGAAATGCCATCGACAAGTGTGAGTTCCAAGAAATGCCATCGTAAAAGCGATTTTGTC
CCAAAAATACCATCGCCGTTAGGGTTCCGTCCATTCCGCGCCGTTAAATACACTGTTCATCCTA
TAGAACTTAACGACGTGGAATGGACGGAACCCTAACGGCGATGGCATTTTTGGGACAAAATCGT
TTGTACGATGGCATTTCTTGGAACTCACACTTGTCGATGGCATTTCTGGGACTTGGACGCTTGT
CAATGGCATTTTATGGATTATCTCTATAATTTTAGGTTAGCATATTCAGCAATTATGCAAAAGT
ATGGTTGTACCTCTTGGGGCCATGATTCATTCTTCTATTGATAATCACCCCCTAGCTAGCATTA
TTATATCCGTGTTTTGATAGTCGAGATACTTTGCTTGACCATATCTGTTATTTTTTCTATGGAG
GGTTCTCTAATTATTTCTGCAAGCTTCTGTAGCTGTTCTATTGACGTGCTAAATTAGTATAGAA
GAAAAGCAATGGTCTTGTATATTTGAAGAGTTTGTGCAAAAGTTCTGATGATCCTCACCTGATA
CACAATATCACAACGTTTTGCAGTTATACCCGTATCATCTTGCAGACTATATCTGCCGAGTTTC
GAGGATCTCACCATTTAGATATTATTGTGACATCTTGTTTGAAGCTATGAAGAATGGTAATCTC
TTGTTAATAGAAATAGTTTCTTTCATGTCATTTATGTATTTGTTTAGCATCCTCGTATAAAGAT
CACATTTAATTGGTTAATTATTTTATGTCTTATTTGACATATAATAACAATAAAAAAGGTATTA
CATTGGTTTCTATTTTATGTTACTACAACATCGGGCAATTCCTGGCCTAAGGGGGTTTTCTTTT
AGTTGCAGAACAGGGCAATGTATTGATAGACAATTCTTCCATCTAGTTTTACTATTAAGTTCTA
TGGGTACCTCAGGGTGTACAGAGTCCCTGTGCAGGCAACTATTATGTACAAAGTTGCATAATTG
TTTTTTGTTTCATCCTATTTTGTGATAGTTTTGTGTAATCTATGTCGTTTTTAGTTGAATACCT
CTGTAACAGCATGGAAACAATATAAATAAGCTTTTATTTTTGCCAAATTACAAGAAATGTGATT
TTACTCTTTTAGGTTTGTTCAGCATAGCTCTTAGAATTAGCCTTTATCTTCAACTGATTATTTC
TGATGGCAATAATTTAGTAATCACTTTGAAACATGGAGGTGACTATCATAAATGAGTATACTTC
CACCTGCTTTATTCATCGATGTTGTTCCTGTTTATAGTTCTGACATGTTTTGGTTATGTTATTG
CAGAGCAACCATATGACAGTATTCCAAACTTCACTGCTGCTGATGCCTTGAGGCTTACTGGCGT
TGGAAGAAATGAGTTCATTGATATTATGAACAAATGCAGATCAAAGGTAGTATCCATTCTCATG
GCTTTTTGCACATTACCACCTGCTCTTACCTTGAAAACCGTAAATTGTTTTCAAATAGTTCACT
GTTTGACTTCTGGAGTAATCTGCTACACACTGAAACAATATTGGACAATTTGGAAGCTCGCAAG
AAATAATAAAAACATTGGAATAATGGATATTACCTTGAACATATCTCAACTAAGCAGTAACTGA
ATCCTAAACCATTAAGCTTACTATTGTTTAGATGCACTTCTGCAGTGTCAGGCTGAATTTGAGT
TATGAAATATAACGATTCTGTGTAAACAATGATGTGCAATTGTGCTAACTAGTTAGTCCAGTTC
ATGAGAAAAGTCATGAATGCACTACCAGGTTACCTTTTCTTTTTTTCAGTATGAATCTAGAGTG
GTTTTTCATGATGTAGTAGTACTATTTTGTAGCAAGATCGATTACCCTAGCAAATAATACTATT
TCTTGCTGAATTCTTCAGAAACTAATGTGGAAGCTGAATAAGTCAATTGCAAAAGAATTATTGC
CTACACAGCCTGTTGACTTCCCAATCGATCCTTGGTGGGGAGTTTGTCTTGTGAACTTCACTAT
AGAAGAGTTTAAGGTCAGGTTTGCCCCACTCTCTATATGCTGTACATATCACAATATGTATATC
AATGCGGTGAAACTGCTTTTGTTAGCTTGGAAGATAAACGAATTTCTCGAGTTTTTGTTTCTAT
ATGAAGCTATTATTTCTTGATGAAATCTTTACATCTCATTGGTTGATTGTAGAAACTTTCAGAG
GAAGAGACTGCAACAATAGACAAAATATGCAAAGAAGAAGCCAATTCCTATGTTCTATTTGACC
CAAAGGTCATAGATGGCCTTTATAAAAGAGGTTTAGTGTATTTTGATGTGCCTGTTTACCCTGA
CGACCGCTTTAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.114363287
Functional Information
Coding potential Y
Potential coding position 11213648-11213647(+)
11216101-11213612(+)
11214406-11216089(-)
Potential amino acid sequence MMKYLRRNLALYPYHLADYICRVSRISPFRYYCDILFEAMKNEQPYDSIPNFTAADALRLTGVG
RNEFIDIMNKCRSKKLMWKLNKSIAKELLPTQPVDFPIDPWWGVCLVNFTIEEFKKLSEEETAT
IDKICKEEANSYVLFDPKVIDGLYKRGLVYFDVPVYPDDRFKGLWITASENDYNGILVLLVECA
GKGSTMRK*(+)
MCLFTLTTALKDCGLLHPKTITMEYLFCS*(+)
MVRSSKLGRYSLQDDTGIMQDSSGGISSFPHSTPLPCTLYEQNKYSIVIVFGCSNPQSFKAVVR
VNRHIKIH*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017