Manual

Manual of PlantcircBase


Published year:

Published in 2021
  1. Bian, X.B., Yu, P.C., Dong, L., Zhao, Y., Yang, H., Han, Y.Z., and Zhang, L.X. (2021). Regulatory role of non-coding RNA in ginseng rusty root symptom tissue. Scientific Reports 1110.1038/s41598-021-88709-3.
  2. Huang, X.P., Zhang, H.Y., Guo, R., Wang, Q., Liu, X.Z., Kuang, W.G., Song, H.Y., Liao, J.L., Huang, Y.J., and Wang, Z.H. (2021). Systematic identification and characterization of circular RNAs involved in flag leaf senescence of rice. Planta 25310.1007/s00425-020-03544-6.
  3. Liu, X.Q., Gao, Y.B., Liao, J.K., Miao, M., Chen, K., Xi, F.H., Wei, W.T., Wang, H.H., Wang, Y.S., Xu, X., et al. (2021). Genome-wide profiling of circular RNAs, alternative splicing, and R-loops in stem-differentiating xylem of Populus trichocarpa. Journal of Integrative Plant Biology 63:1294-1308. 10.1111/jipb.13081.
  4. Ma, B.H., Liu, Z.Z., Yan, W., Wang, L.X., He, H.B., Zhang, A.J., Li, Z.Y., Zhao, Q.Z., Liu, M.M., Guan, S.Y., et al. (2021). Circular RNAs acting as ceRNAs mediated by miRNAs may be involved in the synthesis of soybean fatty acids. Functional & Integrative Genomics 21:435-450. 10.1007/s10142-021-00791-y.
  5. Ma, P., Gao, S., Zhang, H.Y., Li, B.Y., Zhong, H.X., Wang, Y.K., Hu, H.M., Zhang, H.K., Luo, B.W., Zhang, X., et al. (2021). Identification and characterization of circRNAs in maize seedlings under deficient nitrogen. Plant Biology 23:850-860. 10.1111/plb.13280.
  6. Wang, Z.Y., Li, N., Yu, Q.H., and Wang, H. (2021). Genome-Wide Characterization of Salt-Responsive miRNAs, circRNAs and Associated ceRNA Networks in Tomatoes. International Journal of Molecular Sciences 2210.3390/ijms222212238.
  7. Zhou, R., Sanz-Jimenez, P., Zhu, X.T., Feng, J.W., Shao, L., Song, J.M., and Chen, L.L. (2021). Analysis of Rice Transcriptome Reveals the LncRNA/CircRNA Regulation in Tissue Development. Rice 1410.1186/s12284-021-00455-2.
Published in 2020
  1. Zhang J, Liu R, Zhu Y, Gong J, Yin S, Sun P, Feng H, Wang Q, Zhao S, Wang Z, Li G. 2020. Identification and Characterization of circRNAs Responsive to Methyl Jasmonate in Arabidopsis thaliana. Int J Mol Sci. 21(3):792.
  2. Philips A, Nowis K, Stelmaszczuk M, Jackowiak P, Podkowiński J, Handschuh L, Figlerowicz M. 2020. Expression Landscape of circRNAs in Arabidopsis thaliana Seedlings and Adult Tissues. Front Plant Sci. 11:576581.
  3. Salih H, Wang X, Chen B, Jia Y, Gong W, Du X. 2020. Identification, characterization and expression profiling of circular RNAs in the early cotton fiber developmental stages. Genomics. 113(1 Pt 1):356-365.
  4. Wang X, Chang X, Jing Y, Zhao J, Fang Q, Sun M, Zhang Y, Li W, Li Y. 2020. Identification and functional prediction of soybean CircRNAs involved in low-temperature responses. J Plant Physiol. 250:153188.
  5. Hong YH, Meng J, Zhang M, Luan YS. 2020. Identification of tomato circular RNAs responsive to Phytophthora infestans. Gene. 746:144652.
  6. Yang X, Liu Y, Zhang H, Wang J, Zinta G, Xie S, Zhu W, Nie WF. 2020. Genome-Wide Identification of Circular RNAs in Response to Low-Temperature Stress in Tomato Leaves. Front Genet. 11:591806.
  7. Zheng WQ, Zhang Y, Chen B, Wei M, Wang XW, Du L. 2020. Identification and Characterization of circRNAs in the Developing Stem Cambium of Poplar Seedlings. Mol Biol (Mosk).54(5):802-812.
  8. Song Y, Bu C, Chen P, Liu P, Zhang D. 2020. Miniature inverted repeat transposable elements (MITEs) cis-regulate circular RNA expression and promote ethylene biosynthesis, reducing poplar heat tolerance. J Exp Bot. eraa570.
Published in 2019
  1. Han et al. Identification, characterization, and functional prediction of circular RNAs in maize.
  2. He et al. Systematic identification and analysis of heat-stress-responsive lncRNAs, circRNAs and miRNAs with associated co-expression and ceRNA networks in cucumber (Cucumis sativus L.)
  3. Lv et al. Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress.
  4. Wang et al. Transcriptome-Wide Identification and Characterization of Circular RNAs in Leaves of Chinese Cabbage (Brassica rapa L. ssp. pekinensis) in Response to Calcium Deficiency-Induced Tip-burn.
  5. Luo et al. Circular RNAs exhibit extensive intraspecific variation in maize.
  6. Zhang et al. A large-scale circular RNA profiling reveals universal molecular mechanisms responsive to drought stress in maize and Arabidopsis.
  7. Zhu et al. Identification of cucumber circular RNAs responsive to salt stress.
  8. Xu et al. Identification and characterization of CircRNAs involved in the regulation of wheat root length.
  9. Guria A, Velayudha Vimala Kumar K, Srikakulam N, Krishnamma A, Chanda S, Sharma S, Fan X, Pandi G.2019.Circular RNA Profiling by Illumina Sequencing via Template-Dependent Multiple Displacement Amplification.
Published in 2018
  1. Chen et al. Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize.New Phytol 217(3):1292-1306.
  2. Pan et al. Heat stress alters genome-wide profiles of circular RNAs in Arabidopsis.Plant Mol Biol 96(3):217-229.
  3. Chen L, Ding X, Zhang H, He T, Li Y, Wang T, Li X, Jin L, Song Q, Yang S, Gai J.2018.Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing.BMC Genomics 19(1):663.
  4. Ren Y, Yue H, Li L, Xu Y, Wang Z, Xin Z, Lin T.2018.Identification and characterization of circRNAs involved in the regulation of low nitrogen-promoted root growth in hexaploid wheat.Biol Res 51(1):43.
  5. Tang B, Hao Z, Zhu Y, Zhang H, Li G.2018.Genome-wide identification and functional analysis of circRNAs in Zea mays.PLoS One 13(12):e0202375.
  6. Tong W, Yu J, Hou Y, Li F, Zhou Q, Wei C, Bennetzen JL.2018.Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis).Planta 248(6):1417-1429.
  7. Wang J, Lin J, Wang H, Li X, Yang Q, Li H, Chang Y.2018.Identification and characterization of circRNAs in Pyrus betulifolia Bunge under drought stress.PLoS One 13(7):e0200692.
  8. Wang J, Yang Y, Jin L, Ling X, Liu T, Chen T, Ji Y, Yu W, Zhang B.2018.Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection.BMC Plant Biol 18(1):104.
  9. Xiang L, Cai C, Cheng J, Wang L, Wu C, Shi Y, Luo J, He L, Deng Y, Zhang X, Yuan Y, Cai Y.2018.Identification of circularRNAs and their targets in Gossypium under Verticillium wilt stress based on RNA-seq.PeerJ 6:e4500.
  10. Zeng RF, Zhou JJ, Hu CG, Zhang JZ.2018.Transcriptome-wide identification and functional prediction of novel and flowering-related circular RNAs from trifoliate orange (Poncirus trifoliata L. Raf.).Planta 247(5):1191-1202.
  11. Zhou R, Zhu Y, Zhao J, Fang Z, Wang S, Yin J, Chu Z, Ma D.2018.Transcriptome-Wide Identification and Characterization of Potato Circular RNAs in Response to Pectobacterium carotovorum Subspecies brasiliense Infection.Int J Mol Sci 19(1). pii: E71.
  12. Junliang Yin, Mengyu Liu, Dongfang Ma, Jiawen Wu, Shenglan Li, Yongxing Zhu, Bin Han. Identification of circular RNAs and their targets during tomato fruit ripening
Published in 2017
  1. Chen G, Cui J, Wang L, Zhu Y, Lu Z, and Jin B. 2017. Genome-Wide Identification of Circular RNAs in Arabidopsis thaliana. Front Plant Sci 8, 1678. [Full text]
  2. Chen L, Zhang P, Fan Y, Lu Q, Li Q, Yan J, Muehlbauer GJ, Schnable PS, Dai M and Li L. 2017. Circular RNAs mediated by transposons are associated with transcriptomic and phenotypic variation in maize. New Phytol. doi: 10.1111/nph.14901. [Full text]
  3. Chu Q, Zhang X, Zhu X, Liu C, Mao L, Ye C, Zhu Q, Fan L. 2017. PlantcircBase: a database for plant circular RNAs. Molecular Plant [Full text]
  4. Dou Y, Li S, Yang W, Liu K, Du Q, Ren G, Yu B, and Zhang C. 2017. Genome-wide Discovery of Circular RNAs in the Leaf and Seedling Tissues of Arabidopsis Thaliana. Curr Genomics 18, 360-365. [Full text]
  5. Liu T, Zhang L, Chen G, and Shi T. 2017. Identifying and Characterizing the Circular RNAs during the Lifespan of Arabidopsis Leaves. Front Plant Sci 8, 1278. [Full text]
  6. Pan T, Sun X, Liu Y, et al. 2017. Heat stress alters genome-wide profiles of circular RNAs in Arabidopsis. Plant Mol Biol. doi: 10.1007/s11103-017-0684-7. [Full text]
  7. Tan J, Zhou Z, Niu Y, Sun X, and Deng Z. 2017. Identification and Functional Characterization of Tomato CircRNAs Derived from Genes Involved in Fruit Pigment Accumulation. Sci Rep 7, 8594. [Full text]
  8. Zhao T, Wang L, Li S, Xu M, Guan X, and Zhou B. 2017. Characterization of conserved circular RNA in polyploid Gossypium species and their ancestors. FEBS Lett 591(21), 3660-3669. [Full text]
  9. Zhao W, Cheng Y, Zhang C, You Q, Shen X, Guo W, and Jiao Y. 2017. Genome-wide identification and characterization of circular RNAs by high throughput sequencing in soybean. Sci Rep 7，5636. [Full text]
Published in 2016
  1. Darbani B, Noeparvar S, Borg S. 2016. Identification of circular RNAs from the parental genes involved in multiple aspects of cellular metabolism in barley. Front Plant Sci 7: 776. [PMC free article]
  2. Sun X, Wang L, Ding J, Wang Y, Wang J, Zhang X, Che Y, Liu Z, Zhang X, Ye J, et al. 2016. Integrative analysis of Arabidopsis thaliana transcriptomics reveals intuitive splicing mechanism for circular RNA. FEBS Lett 590(20): 3510-3516. [PubMed]
  3. Wang Y, Yang M, Wei S, Qin F, Zhao H, and Suo B. 2017. Identification of Circular RNAs and Their Targets in Leaves of Triticum aestivum L. under Dehydration Stress. Front Plant Sci 7, 2024. [Full text]
  4. Ye CY, Zhang X, Chu Q, Liu C, Yu Y, Jiang W, Zhu QH, Fan L, Guo L. 2016. Full-length sequence assembly reveals circular RNAs with diverse non-GT/AG splicing signals in rice. RNA Biol DOI: 10.1080/15476286.2016.1245268 [Full text]
  5. Zuo J, Wang Q, Zhu B, Luo Y, Gao L. 2016. Deciphering the roles of circRNAs on chilling injury in tomato. Biochem Biophys Res Commun 479(2): 132-138. [Full Text]
Published in 2015
  1. Lu T, Cui L, Zhou Y, Zhu C, Fan D, Gong H, Zhao Q, Zhou C, Zhao Y, Lu D, et al. 2015. Transcriptome-wide investigation of circular RNAs in rice. RNA 21(12): 2076-2087. [PubMed]
  2. Ye CY, Chen L, Liu C, Zhu QH, Fan L. 2015. Widespread noncoding circular RNAs in plants. New Phytol 208(1): 88-95. [PubMed]
Published in 2014
  1. Wang PL, Bao Y, Yee MC, Barrett SP, Hogan GJ, Olsen MN, Dinneny JR, Brown PO, Salzman J. 2014. Circular RNA is expressed across the eukaryotic tree of life. PLoS One 9(6): e90859. [PubMed]

Published year:

Published in 2021
  1. Babaei, S., Singh, M.B., and Bhalla, P.L. (2021). Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development. International Journal of Molecular Sciences 2210.3390/ijms221910297.
  2. Li, J., Cui, J., Dai, C., Liu, T., Cheng, D., and Luo, C. (2021). Whole-Transcriptome RNA Sequencing Reveals the Global Molecular Responses and CeRNA Regulatory Network of mRNAs, lncRNAs, miRNAs and circRNAs in Response to Salt Stress in Sugar Beet (Beta vulgaris). International Journal of Molecular Sciences 2210.3390/ijms22010289.
  3. Sun, J., Dong, Y., Wang, C., Xiao, S., Jiao, Z., and Gao, C. (2021). Identification and characterization of melon circular RNAs involved in powdery mildew responses through comparative transcriptome analysis. Peerj 910.7717/peerj.11216.
  4. Wang, L., Li, J., Guo, B., Xu, L., Li, L., Song, X., Wang, X., Zeng, X., Wu, L., Niu, D., et al. (2022). Exonic Circular RNAs Are Involved in Arabidopsis Immune Response Against Bacterial and Fungal Pathogens and Function Synergistically with Corresponding Linear RNAs. Phytopathology:PHYTO09200398R-PHYTO09200398R. 10.1094/phyto-09-20-0398-r.
  5. Yang, Y., Jiang, X., Shi, J., Wang, Y., Huang, H., Yang, Y., Li, D., Jiang, S., Wang, D., and Chen, Z. (2022). Functional Annotation of circRNAs in Tea Leaves After Infection by the Tea Leaf Spot Pathogen, Lasiodiplodia theobromae. Phytopathology 112:460-463. 10.1094/phyto-05-21-0184-a.
  6. Zhang, H., Liu, S., Li, X., Yao, L., Wu, H., Baluska, F., and Wan, Y. (2021). An Antisense Circular RNA Regulates Expression of RuBisCO Small Subunit Genes in Arabidopsis. Frontiers in Plant Science 1210.3389/fpls.2021.665014.
  7. Zhang, Z., Wang, H., Wang, Y., Xi, F., Wang, H., Kohnen, M.V., Gao, P., Wei, W., Chen, K., Liu, X., et al. (2021). Whole-genome characterization of chronological age-associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth. Plant Journal 106:435-453. 10.1111/tpj.15174.
Published in 2020
  1. Zhang P, Li S, Chen M.2020. Characterization and Function of Circular RNAs in Plants. Front Mol Biosci. 19;7:91.
  2. Zhang P, Liu Y, Chen H, Meng X, Xue J, Chen K, Chen M.2020. CircPlant: An Integrated Tool for circRNA Detection and Functional Prediction in Plants. Genomics Proteomics Bioinformatics. 18(3):352-358.
  3. Luo Z, Qian J, Chen S, Li L.2020. Dynamic patterns of circular and linear RNAs in maize hybrid and parental lines. Theor Appl Genet. 133(2):593-604.
  4. Philips A, Nowis K, Stelmaszczuk M, Podkowiński J, Handschuh L, Jackowiak P, Figlerowicz M.2020. Arabidopsis thaliana cbp80, c2h2, and flk Knockout Mutants Accumulate Increased Amounts of Circular RNAs. Cells. 9(9):1937.
  5. Ivanov AV, Shmyglya IV, Zherdev AV, Dzantiev BB, Safenkova IV.2020. The Challenge for Rapid Detection of High-Structured Circular RNA: Assay of Potato Spindle Tuber Viroid Based on Recombinase Polymerase Amplification and Lateral Flow Tests. Plants (Basel). 9(10):1369.
  6. Dissanayaka Mudiyanselage SD, Wang Y.2020. Evidence Supporting That RNA Polymerase II Catalyzes De Novo Transcription Using Potato Spindle Tuber Viroid Circular RNA Templates. Viruses. 12(4):371.
  7. Fan J, Quan W, Li GB, Hu XH, Wang Q, Wang H, Li XP, Luo X, Feng Q, Hu ZJ, Feng H, Pu M, Zhao JQ, Huang YY, Li Y, Zhang Y, Wang WM.2020. circRNAs Are Involved in the Rice-Magnaporthe oryzae Interaction. Plant Physiol. 182(1):272-286.
  8. Zhang J, Wang H, Wu W, Dong Y, Wang M, Yi D, Zhou Y, Xu Q.2020. Systematic Identification and Functional Analysis of Circular RNAs During Rice Black-Streaked Dwarf Virus Infection in the Laodelphax striatellus (Fallén) Midgut. Front Microbiol. 11:588009.
  9. Qu X, Zheng C, Wang B, Wang F, Sun X, Gao Y, Xia Q, Kong X.2021. Comprehensive analysis of circular RNAs from steatotic livers after ischemia and reperfusion injury by next-generation RNA sequencing. FEBS Lett. 595(1):99-109.
  10. Liu H, Yu W, Wu J, Li Z, Li H, Zhou J, Hu J, Lu Y.2020. Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability. Planta. 251(2):47.
Published in 2019
  1. Liu Y, Su H, Zhang J, Liu Y, Feng C, Han F.2019.Back-spliced RNA from retrotransposon binds to centromere and regulates centromeric chromatin loops in maize.
  2. Guria A, Sharma P, Natesan S, Pandi G.2019.Circular RNAs-The Road Less Traveled.
  3. Wang J, Wang L.2019.Deep learning of the back-splicing code for circular RNA formation.
  4. Fu XZ, Zhang XY, Qiu JY, Zhou X, Yuan M, He YZ, Chun CP, Cao L, Ling LL, Peng LZ.2019.Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka).
  5. Chen X, Sun S, Liu F, Shen E, Liu L, Ye C, Xiao B, Timko MP, Zhu QH, Fan L, Cao P.2019.A transcriptomic profile of topping responsive non-coding RNAs in tobacco roots (Nicotiana tabacum).
  6. Shao J, Wang L, Liu X, Yang M, Chen H, Wu B, Liu C.2019.Identification and characterization of circular RNAs in Ganoderma lucidum.
  7. Liang Y, Zhang Y, Xu L, Zhou D, Jin Z, Zhou H, Lin S, Cao J, Huang L.2019.CircRNA Expression Pattern and ceRNA and miRNA-mRNA Networks Involved in Anther Development in the CMS Line of Brassica campestris.
  8. Jia R, Xiao MS, Li Z, Shan G, Huang C.2019.Defining an evolutionarily conserved role of GW182 in circular RNA degradation.
  9. Wang H, Wang H, Zhang H, Liu S, Wang Y, Gao Y, Xi F, Zhao L, Liu B, Reddy ASN, Lin C, Gu L.2019.The interplay between microRNA and alternative splicing of linear and circular RNAs in eleven plant species.
  10. Jiang L, Lim CJ, Jeong JC, Kim CY, Kim DH, Kim SW, Lee J.2019.Whole-genome sequence data and analysis of Saccharibacillus sp. ATSA2 isolated from Kimchi cabbage seeds.
  11. Frydrych Capelari, da Fonseca GC, Guzman F, Margis R.2019.Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP Libraries.
  12. Zhang X, Ma X, Ning L, Li Z, Zhao K, Li K, He J, Yin D.2019.Genome-wide identification of circular RNAs in peanut (Arachis hypogaea L.).
  13. Wang Y, Xiong Z, Li Q, Sun Y, Jin J, Chen H, Zou Y, Huang X, Ding Y.2019.Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition.
  14. Yang Z, Li W, Su X, Ge P, Zhou Y, Hao Y, Shu H, Gao C, Cheng S, Zhu G, Wang Z.2019.Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis.
  15. Lin YC, Lee YC, Chang KL, Hsiao KY.2019.Analysis of common targets for circular RNAs.
  16. Liu XQ, Gao YB, Zhao LZ, Cai YC, Wang HY, Miao M, Gu LF, Zhang HX.2019.[Biogenesis, research methods, and functions of circular RNAs].
  17. Wang Y, Gao Y, Zhang H, Wang H, Liu X, Xu X, Zhang Z, Kohnen MV, Hu K, Wang H, Xi F, Zhao L, Lin C, Gu L.2019.Genome-Wide Profiling of Circular RNAs in the Rapidly Growing Shoots of Moso Bamboo (Phyllostachys edulis).
  18. Gao Z, Li J, Luo M, Li H, Chen Q, Wang L, Song S, Zhao L, Xu W, Zhang C, Wang S, Ma C.2019.Characterization and Cloning of Grape Circular RNAs Identified the Cold Resistance-Related Vv-circATS1.
  19. Zhao W, Chu S, Jiao Y.2019.Present Scenario of Circular RNAs (circRNAs) in Plants.
  20. Zhang G, Diao S, Zhang T, Chen D, He C, Zhang J.2019.Identification and characterization of circular RNAs during the sea buckthorn fruit development.
  21. Hassan O, Chang T.2019.Phylogenetic and Morphological Reassessment of Mycosphaerella nawae, the Causal Agent of Circular Leaf Spot in Persimmon.
  22. Yang Y, Liu T, Shen D, Wang J, Ling X, Hu Z, Chen T, Hu J, Huang J, Yu W, Dou D, Wang MB, Zhang B.2019.Tomato yellow leaf curl virus intergenic siRNAs target a host long noncoding RNA to modulate disease symptoms.
  23. Ye J, Wang L, Li S, Zhang Q, Zhang Q, Tang W, Wang K, Song K, Sablok G, Sun X, Zhao H.2019.AtCircDB: a tissue-specific database for Arabidopsis circular RNAs.
  24. Wang K, Wang C, Guo B, Song K, Shi C, Jiang X, Wang K, Tan Y, Wang L, Wang L, Li J, Li Y, Cai Y, Zhao H, Sun X.2019.CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress.
  25. Liu S, Wang Q, Li X, Wang G, Wan Y.2019.Detecting of chloroplast circular RNAs in Arabidopsis thaliana.
  26. Meng X, Hu D, Zhang P, Chen Q, Chen M.2019.CircFunBase: a database for functional circular RNAs.
Published in 2018
  1. Guo R, Chen D, Chen H, Fu Z, Xiong C, Hou C, Zheng Y, Guo Y, Wang H, Du Y, Diao Q.2018.Systematic investigation of circular RNAs in Ascosphaera apis, a fungal pathogen of honeybee larvae.Gene 678:17-22.
  2. Meng X, Zhang P, Chen Q, Wang J, Chen M.2018.Identification and characterization of ncRNA-associated ceRNA networks in Arabidopsis leaf development.BMC Genomics 19(1):607.
  3. Zuo J, Wang Y, Zhu B, Luo Y, Wang Q, Gao L.2018.Analysis of the Coding and Non-Coding RNA Transcriptomes in Response to Bell Pepper Chilling.Int J Mol Sci 19(7). pii: E2001.
  4. Luo J, Wang XL, Sun ZC, Wu D, Zhang W, Wang ZJ.2018.[Progress in circular RNAs of plants].Yi Chuan 40(6):467-477.
  5. Zhou R, Xu L, Zhao L, Wang Y, Zhao T.2018.Genome-wide identification of circRNAs involved in tomato fruit coloration. Biochem Biophys Res Commun 499(3):466-469.
  6. James D, Phelan J, Sanderson D.2018.Blackcurrant Leaf Chlorosis Associated Virus: Evidence of the Presence of Circular RNA during Infections.Viruses 10(5). pii: E260.
  7. Belousova EA, Filipenko ML, Kushlinskii NE.2018.Circular RNA: New Regulatory Molecules.Bull Exp Biol Med 164(6):803-815.
  8. Cheng J, Zhang Y, Li Z, Wang T, Zhang X, Zheng B.2018.A lariat-derived circular RNA is required for plant development in Arabidopsis.Sci China Life Sci 61(2):204-213.
  9. Litholdo CG Jr, da Fonseca GC.2018.Circular RNAs and Plant Stress Responses.Adv Exp Med Biol 1087:345-353.
  10. Lai X, Bazin J, Webb S, Crespi M, Zubieta C, Conn SJ.2018.CircRNAs in Plants.Adv Exp Med Biol 1087:329-343.
  11. de la Pena M.2018.Circular RNAs Biogenesis in Eukaryotes Through Self-Cleaving Hammerhead Ribozymes. Adv Exp Med Biol 1087:53-63.
  12. Eger N, Schoppe L, Schuster S, Laufs U, Boeckel JN.2018.Circular RNA Splicing.Adv Exp Med Biol 1087:41-52.
  13. Aghaee-Bakhtiari SH.2018.Online Databases and Circular RNAs.Adv Exp Med Biol 1087:35-38.
  14. Zhou J, Ge Y, Hu Y, Rong D, Fu K, Wang H, Cao H, Tang W.2018.Circular RNAs as novel rising stars with huge potentials in development and disease.Cancer Biomark 22(4):597-610.
Published in 2017
  1. Wang M, Yu F, Wu W, Zhang Y, Chang W, Ponnusamy M, Wang K, Li P.2017.Circular RNAs: A novel type of non-coding RNA and their potential implications in antiviral immunity.Int J Biol Sci 13(12):1497-1506.
  2. Wang Y, Wang Q, Gao L, Zhu B, Luo Y, Deng Z, Zuo J.2017.Integrative analysis of circRNAs acting as ceRNAs involved in ethylene pathway in tomato.Physiol Plant 161(3):311-321.
  3. Meng X, Chen Q, Zhang P, Chen M.2017.CircPro: an integrated tool for the identification of circRNAs with protein-coding potential.Bioinformatics 33(20):3314-3316.
  4. Li C, Li X, Yao Y, Ma Q, Ni W, Zhang X, Cao Y, Hazi W, Wang D, Quan R, Hou X, Liu Z, Zhan Q, Liu L, Zhang M, Yu S, Hu S.2017.Genome-wide analysis of circular RNAs in prenatal and postnatal muscle of sheep.Oncotarget 8(57):97165-97177.
  5. Mohanty JN, Nayak S, Jha S, Joshi RK.2017.Transcriptome profiling of the floral buds and discovery of genes related to sex-differentiation in the dioecious cucurbit Coccinia grandis (L.) Voigt.Gene 626:395-406.
  6. de la Pena M, Cervera A.2017.Circular RNAs with hammerhead ribozymes encoded in eukaryotic genomes: The enemy at home. RNA Biol 14(8):985-991.
  7. Yang Z, Xie L, Han L, Qu X, Yang Y, Zhang Y, He Z, Wang Y, Li J.2017.Circular RNAs: Regulators of Cancer-Related Signaling Pathways and Potential Diagnostic Biomarkers for Human Cancers.Theranostics 7(12):3106-3117.
  8. Meng X, Li X, Zhang P, Wang J, Zhou Y, Chen M.2017.Circular RNA: an emerging key player in RNA world.Brief Bioinform 18(4):547-557.
  9. Li QF, Zhang YC, Chen YQ, Yu Y.2017.Circular RNAs roll into the regulatory network of plants.Biochem Biophys Res Commun 488(2):382-386.
  10. Lee SM, Kong HG, Ryu CM.2017.Are Circular RNAs New Kids on the Block?Trends Plant Sci 22(5):357-360.
  11. Wang Z, Liu Y, Li D, Li L, Zhang Q, Wang S, Huang H.2017.Identification of Circular RNAs in Kiwifruit and Their Species-Specific Response to Bacterial Canker Pathogen Invasion.Front Plant Sci 8:413
  12. Wang Y, Yang M, Wei S, Qin F, Zhao H, Suo B.2017.Identification of Circular RNAs and Their Targets in Leaves of Triticum aestivum L. under Dehydration Stress.Front Plant Sci 7:2024
  13. Zhang P, Meng X, Chen H, Liu Y, Xue J, Zhou Y, Chen M.2017.PlantCircNet: a database for plant circRNA-miRNA-mRNA regulatory networks.Database (Oxford) 2017. pii: bax089.
  14. Zhang G, Duan A, Zhang J, He C.2017.Genome-wide analysis of long non-coding RNAs at the mature stage of sea buckthorn (Hippophae rhamnoides Linn) fruit.Gene 596:130-136.
Published in 2016
  1. Kulcheski FR, Christoff AP, Margis R.2016.Circular RNAs are miRNA sponges and can be used as a new class of biomarker.J Biotechnol 238:42-51.
  2. Chen L, Yu Y, Zhang X, Liu C, Ye C, Fan L.2016.PcircRNA_finder: a software for circRNA prediction in plants.Bioinformatics 32(22):3528-3529. Epub 2016 Aug 4.
  3. Paul S, Gayen D, Datta SK, Datta K.2016.Analysis of high iron rice lines reveals new miRNAs that target iron transporters in roots.J Exp Bot 67(19):5811-5824. Epub 2016 Oct 11.
  4. Cervera A, Urbina D.2016.Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs.Genome Biol 17(1):135.
  5. Wang Y, Qu J, Ji S, Wallace AJ, Wu J, Li Y, Gopalan V, Ding B.2016.A Land Plant-Specific Transcription Factor Directly Enhances Transcription of a Pathogenic Noncoding RNA Template by DNA-Dependent RNA Polymerase II.Plant Cell 28(5):1094-107.
  6. Sablok G, Zhao H, Sun X.2016.Plant Circular RNAs (circRNAs): Transcriptional Regulation Beyond miRNAs in Plants.Mol Plant 9(2):192-194.
  7. Huang CK, Shen YL, Huang LF, Wu SJ, Yeh CH, Lu CA.2016.The DEAD-Box RNA Helicase AtRH7/PRH75 Participates in Pre-rRNA Processing, Plant Development and Cold Tolerance in Arabidopsis.Plant Cell Physiol 57(1):174-91.
Published in 2015
  1. Nazareno AG, Carlsen M, Lohmann LG.2015.Complete Chloroplast Genome of Tanaecium tetragonolobum: The First Bignoniaceae Plastome.PLoS One 10(6):e0129930.
  2. Avina-Padilla K, Martinez de la Vega O, Rivera-Bustamante R, Martinez-Soriano JP, Owens RA, Hammond RW, Vielle-Calzada JP.2015.In silico prediction and validation of potential gene targets for pospiviroid-derived small RNAs during tomato infection.Gene 564(2):197-205.
  3. DasGupta S, Shelke SA, Li NS, Piccirilli JA.2015.Spinach RNA aptamer detects lead(II) with high selectivity.Chem Commun (Camb) 51(43):9034-7.
  4. Yan L, Lai X, Li X, Wei C, Tan X, Zhang Y.2015.Analyses of the complete genome and gene expression of chloroplast of sweet potato [Ipomoea batata].PLoS One 10(4):e0124083.
  5. Kwok CK, Ding Y, Shahid S, Assmann SM, Bevilacqua PC.2015.A stable RNA G-quadruplex within the 5'-UTR of Arabidopsis thaliana ATR mRNA inhibits translation.Biochem J 467(1):91-102.
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Last modified at 2022-05-16