Oryza sativa
40,311 circRNAs
Arabidopsis thaliana
38,938 circRNAs
Zea mays
8,455 circRNAs
Solanum lycopersicum
1,904 circRNAs
Glycine max
8,133 circRNAs
Gossypium hirsutum
499 circRNAs
Triticum aestivum
88 circRNAs
Hordeum vulgare
39 circRNAs
Poncirus trifoliata
556 circRNAs
Solanum tuberosum
1,728 circRNAs
Gossypium arboreum
1,041 circRNAs
Gossypium raimondii
1,478 circRNAs
Camellia sinensis
3,174 circRNAs
Pyrus betulifolia
258 circRNAs
Oryza sativa ssp. indica
1,743 circRNAs
Nicotiana benthamiana
8,559 circRNAs
Brassica rapa
591 circRNAs
Cucumis sativus
4,832 circRNAs
Echinochloa crus-galli
426 circRNAs
Welcome to PlantcircBase 5.0 !
In Plant Circular RNA Database (PlantcircBase), we collected publicly available back-splice junction sequences and their full-length sequences of circRNAs identified in plants by us and other groups. Based on the collected circRNAs, we further predicted those circRNAs putatively acting as miRNA sponges and their potential networks involving circRNA-miRNA-mRNA in the corresponding species.In the database, you can find plant circRNAs and their related information, such as their sequences, host genes, expression, experimental validation as well as bioinformatics tools for visualizing circRNA structures and predicting circRNAs from query sequences.
News
2020-04-30 NEW!
PlantcircBase Release 5 online! Totally, 19 organisms!
2019-03-01
PlantcircBase Release 4 online! Totally, 16 organisms, and 115,171 circRNAs!
Read more >>
Cite us
Qinjie Chu, Xingchen Zhang, Xintian Zhu, Chen Liu, Lingfeng Mao, Chuyu Ye, Qianhao Zhu, Longjiang Fan. 2017. PlantcircBase: a database for plant circular RNAs. Molecular Plant [Full text]
Qinjie Chu, Panpan Bai, Xintian Zhu, Xingchen Zhang, Lingfeng Mao, Qian-Hao Zhu, Longjiang Fan, Chuyu Ye. 2018. Characteristics of Plant Circular RNAs. Briefings in Bioinformatics [Full text]
Copyright©2017-2018 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2020-04-30.
Supported by
