SNP molecular markers associated with Oryza Sativa GWAS
| Species | Chr | Location | Allele | Function |
|---|---|---|---|---|
| Oryza Sativa | Chr1 | 9,061,539 | A/G | heading date |
| Oryza Sativa | Chr1 | 24,405,341 | G/A | heading date |
| Oryza Sativa | Chr5 | 24,369,063 | A/T | heading date |
| Oryza Sativa | Chr7 | 29,623,752 | A/G | heading date |
| Oryza Sativa | Chr7 | 29,144,281 | G/A | heading date |
| Oryza Sativa | Chr1 | 5,000,507 | T/TA | plant height |
| Oryza Sativa | Chr4 | 38,075,511 | G/A | plant height |
| Oryza Sativa | Chr5 | 6,123,470 | T/A | plant height |
| Oryza Sativa | Chr6 | 28,931,506 | G/A | plant height |
| Oryza Sativa | Chr12 | 575,412 | A/ACC | plant height |
| Oryza Sativa | Chr1 | 32,181,335 | G/A | last second leaf length |
| Oryza Sativa | Chr1 | 30,624,130 | TA/T | last second leaf width |
| Oryza Sativa | Chr3 | 27,058,903 | C/T | last second leaf width |
| Oryza Sativa | Chr4 | 32,627,288 | G/T | last second leaf width |
| Oryza Sativa | Chr5 | 29,003,776 | G/A | last second leaf width |
| Oryza Sativa | Chr10 | 20,315,450 | A/G | last second leaf width |
| Oryza Sativa | Chr1 | 22,846,398 | A/AT | last third leaf width |
| Oryza Sativa | Chr3 | 14,327,071 | A/G | panicle length |
| Oryza Sativa | Chr4 | 4,756,398 | G/T | panicle length |
| Oryza Sativa | Chr4 | 32,247,542 | T/G | panicle length |
| Oryza Sativa | Chr9 | 14,572,635 | T/C | panicle per plant |
| Oryza Sativa | Chr3 | 28,425,365 | GAC/G | primary branches |
| Oryza Sativa | Chr5 | 884,899 | G/T | primary branches |
| Oryza Sativa | Chr6 | 6,952,544 | G/A | primary branches |
| Oryza Sativa | Chr10 | 1,139,668 | A/C | primary branches |
| Oryza Sativa | Chr11 | 22,942,047 | T/G | primary branches |
| Oryza Sativa | Chr1 | 1,142,068 | C/T | second branches |
| Oryza Sativa | Chr3 | 28,425,365 | GAC/G | second branches |
| Oryza Sativa | Chr6 | 6,952,544 | G/A | second branches |
| Oryza Sativa | Chr7 | 8,981,045 | A/G | second branches |
| Oryza Sativa | Chr12 | 1,019,413 | TCGTCGCCGCAATCGG/T | second branches |
| Oryza Sativa | Chr3 | 27,162,013 | A/T | spikelets per panicle |
| Oryza Sativa | Chr5 | 1,201,696 | C/A | spikelets per panicle |
| Oryza Sativa | Chr6 | 6,216,099 | G/A | spikelets per panicle |
| Oryza Sativa | Chr8 | 25,664,215 | C/T | spikelets per panicle |
| Oryza Sativa | Chr12 | 620,783 | G/A | spikelets per panicle |
| Oryza Sativa | Chr1 | 24,987,297 | C/T | grain length |
| Oryza Sativa | Chr3 | 6,576,407 | A/C | grain length |
| Oryza Sativa | Chr3 | 13,262,435 | A/G | grain length |
| Oryza Sativa | Chr5 | 27,702,623 | T/G | grain length |
| Oryza Sativa | Chr10 | 10,580,067 | G/A | grain length |
| Oryza Sativa | Chr5 | 4,810,769 | G/A | grain width |
| Oryza Sativa | Chr12 | 4,686,995 | AT/A | grain width |
| Oryza Sativa | Chr1 | 24,879,078 | A/AT | grain thickness |
| Oryza Sativa | Chr3 | 7,256,282 | T/G | grain thickness |
| Oryza Sativa | Chr5 | 1,923,048 | AG/A | grain thickness |
| Oryza Sativa | Chr9 | 18,092,604 | C/G | grain thickness |
| Oryza Sativa | Chr10 | 12,020,503 | AT/A | grain thickness |
| Oryza Sativa | Chr1 | 24,902,823 | C/T | 1000 grain weight |
| Oryza Sativa | Chr3 | 7,256,282 | T/G | 1000 grain weight |
| Oryza Sativa | Chr3 | 13,193,965 | C/T | 1000 grain weight |
| Oryza Sativa | Chr10 | 12,020,503 | AT/A | 1000 grain weight |
| Oryza Sativa | Chr12 | 4,699,735 | TACA/T | 1000 grain weight |
| Oryza Sativa | Chr12 | 24,090,908 | TA/T | 1000 grain weight |