Plant Circular RNA Database

Detail information of 1_circ_igg.9

			
						 General Information
					
						CircRNA Name
						1_circ_igg.9
					
						ID in PlantcircBase
						ath_circ_005448
					
						Alias
						1:11779374-11781970
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 11779374-11781970  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							igg-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							1_circ_igg.3 1_circ_ag.4 1_circ_ag.5 1_circ_igg.6 1_circ_ag.7 1_circ_ag.8 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							NA-NA							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_igg.9
ID in PlantcircBase	ath_circ_005448
Alias	1:11779374-11781970
Organism	Arabidpsis thaliana
Position	chr1: 11779374-11781970 JBrowse»
Reference genome	TAIR10.38
Type	igg-circRNA
Identification method	find_circ; CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	1_circ_igg.3 1_circ_ag.4 1_circ_ag.5 1_circ_igg.6 1_circ_ag.7 1_circ_ag.8
Support reads	2
Tissues	root
Exon boundary	NA-NA "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGCGAGAGCTCAACCCCTAGTCCTTCAGCCTCATCTTTCTGCTTCTCATTGGTGAGATCAGTCT
CTTTAGTGTAAGGAATATTATTGACTGACCTAAAAGggaaaaggagaagacaatgatagccaaa
caggagagataatatacacaacaacttgctcaattggaagaacactgaagaaaaaagaagcggg
taaataat

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GGAAAAGGAGAAGACAATGATAGCCAAACAGGAGAGATAATATACACAACAACTTGCTCAATTG
GAAGAACACTGAAGAAAAAAGAAGCGGGTAAATAATAGCCTTACATTTTTACACCTTCTCTATT
TCTCTTGTTGTATGACAGAATGTGAAATCTCGGGGTGTAGGATGACAAAATTTCAGCATATTGA
AGAAAATTCTCGGGCTATAACCTGGATGAGTAAAAGATTAACTTCTCTTCATTTGACTCTAAAG
GTAAAGAAACCTCTTACGATTTTTTTAAGTTTGTCTGAAAGTATGTAGTCTATGACTTTGCTAT
CTTACTAGCTTATCACTTGTCTACATTCTTTTGGAAGCCTATGACTTTGCTATCTTACTAGCTT
TTCCCTTTCATCCAGTCGCTTTCATTGTCCTTTATGAATGGTTGTCTAGGTGTATATCACCATT
CACCAAAGTATCTTACATGCTTATTCTGCTTGTTGGTCACTACATATAGTTTATCCTCCTATCG
CCTCTTTGGATCAGTGTTTTTCGTTTCAAAGTAAAGACAAATTGCTAACAAAATAGTGTTAAAA
TTTCAGCAGACTAGTGGCTCACTTTACAGTGTATATGGCTCAATTGTGGTTGTTAGCATTCTCA
CATTGTATATGGCTCAATTGTGGTAGACAGAAATATATAGCACAATTTCAGTGAGAAAGAAATT
AAAGTTTGTGATTTACTAAATTTTGCAAGGAAGAAGAAAGGAGCTGATTATGGCTGCATTCTTG
TTTTGTTAGAGCCCTTGTGACTGTACTAGCACCAATCTATTCCGTCTGATAATTGGACATGTTA
CTTATATGGGGTGGTTAAACTGGTAAGTAAGATTGATCATGCATTTGTAGTGTTTAATACCATT
TTCACACAAATAGTTTGTCTTCCTTAAAACTGTAAAAGTGAGAATTTACTTGATTTTCATTTTT
GTTTTGTTTGATTGTGAAATAAGATTTTGAAAGGTCCAGTTATCTCCAAGAAAAAATATCTATG
AAATTGGTTCTGCTTCCTGGCATCCATATTTCTCAAAATTTGTCGTTGTTTCTGAGATAAACAT
GGTGATGATATTATGTTGTTTCAATTGGATTTCCTTAGTTAAGTAGGTAGTGGGGAATGGGGAT
CAATATAGCAGCAGAGAGTGATGTGGTTTTAGTATGAGGAACATGAAGGCATCAAGGTATCTAA
ATTTAATACTCTTGTTTCTACTATGATCTTTCATATTTTTGTATATCGGATCTAGTTAATAAAT
GTGATTTCAACAGGGAAGATGCTTGAAAATTACTTAAAGAGAAGCAAATTTTCCATTAAGTTCA
TGCTCAGAACATATGCAGTTTCAGGTATATTATTCCACTACAGTCACAGAAGTTATCGTCTCTT
TTGTTCATAGCTAATAGACTTCTCAAAATTCTATAGTGATTGAACATGTTTTCTTCTTTGTTTC
TTTGTTTCTTTGATTCTTGGATTCTTTGATCTTTGTTTACTTAGTTGCTTCATTGGTTGCTTAA
CTTGTTTGTATGTTTCCTTCTTTATCACCTTACTTGTTTCATTGTTTAATTACATGCTAAACTT
GTTTTCTCAGTTTTTCCTTCATTGCTAGCTTCTTTACACAACTTGCTTGCTTCCATGATTTGTT
TACTTACACAATTAGAGTAATAGTGATGAAAATTTGTGTTGAACTCGGAAAATTACAACTATTT
GCAACCTAAGAGTTGACAACAAATCCTTCTAAGACTTCCACAAATGAATAATGTTAGATTTCAT
TACTTCTCTCGCAAATCCATTCGCCTCTAAAACATCTCTTCATTGGTTGTTTAACTTATTTGTA
TGTTTCCTTCTTTATCACCTTACTCGTTTCATTGTTTAATCACATGCTAAACTTGTTTTCTCAC
TTTTTTCCTTCATTGCTAGCTTCTTTACACAACTTGCTTGCTTCCATGATTTGTTTACTTACAC
AATTAGAGTAATAAGTGATGAAAATTTGTGTTGAACTCGGAAAATTACAACTACTTGCAACCTA
AGAGTTGACAACCAATCCTTCTAAAACTTCCACAAATGAATAATGTTAGATTCCATCGCTTCTC
TCGCAAATCCATTCGCCTCTAAAACAATTCTGGAAGAACTCAACTTCTCCTCTATATTCTTCAG
CTCTTGGTTGTAGTTTTCAAAATAAATGGTGGCACACCATTTACGAGAATCAAAACAATGCGCT
CCAAATTCCTGATCCCGTAAGCGAAATGATAGGTAGACACGTTGATCAGCTGAGTGGATTTCCC
ATCATACCGACAGACTCCATTCTTAGGTTTGATATATGTTTCAAACACGTATAAACATCATAAC
ATTAATCAATATTTTTTTCACTTGTGTTGGATTCTTTCTTTCTTTGTTCCCTGTATACTTCAAT
ATTATCTTAAGAGTAACATAGAATATATGTCATCAGATAGTAGGAAGATTGCTTCAGCCACTAA
AAGCGAGAGCTCAACCCCTAGTCCTTCAGCCTCATCTTTCTGCTTCTCATTGGTGAGATCAGTC
TCTTTAGTGTAAGGAATATTATTGACTGACCTAAAAG
						
					

			
		

Sequences
Splice junction sequence	AGCGAGAGCTCAACCCCTAGTCCTTCAGCCTCATCTTTCTGCTTCTCATTGGTGAGATCAGTCT CTTTAGTGTAAGGAATATTATTGACTGACCTAAAAGggaaaaggagaagacaatgatagccaaa caggagagataatatacacaacaacttgctcaattggaagaacactgaagaaaaaagaagcggg taaataat
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGAAAAGGAGAAGACAATGATAGCCAAACAGGAGAGATAATATACACAACAACTTGCTCAATTG GAAGAACACTGAAGAAAAAAGAAGCGGGTAAATAATAGCCTTACATTTTTACACCTTCTCTATT TCTCTTGTTGTATGACAGAATGTGAAATCTCGGGGTGTAGGATGACAAAATTTCAGCATATTGA AGAAAATTCTCGGGCTATAACCTGGATGAGTAAAAGATTAACTTCTCTTCATTTGACTCTAAAG GTAAAGAAACCTCTTACGATTTTTTTAAGTTTGTCTGAAAGTATGTAGTCTATGACTTTGCTAT CTTACTAGCTTATCACTTGTCTACATTCTTTTGGAAGCCTATGACTTTGCTATCTTACTAGCTT TTCCCTTTCATCCAGTCGCTTTCATTGTCCTTTATGAATGGTTGTCTAGGTGTATATCACCATT CACCAAAGTATCTTACATGCTTATTCTGCTTGTTGGTCACTACATATAGTTTATCCTCCTATCG CCTCTTTGGATCAGTGTTTTTCGTTTCAAAGTAAAGACAAATTGCTAACAAAATAGTGTTAAAA TTTCAGCAGACTAGTGGCTCACTTTACAGTGTATATGGCTCAATTGTGGTTGTTAGCATTCTCA CATTGTATATGGCTCAATTGTGGTAGACAGAAATATATAGCACAATTTCAGTGAGAAAGAAATT AAAGTTTGTGATTTACTAAATTTTGCAAGGAAGAAGAAAGGAGCTGATTATGGCTGCATTCTTG TTTTGTTAGAGCCCTTGTGACTGTACTAGCACCAATCTATTCCGTCTGATAATTGGACATGTTA CTTATATGGGGTGGTTAAACTGGTAAGTAAGATTGATCATGCATTTGTAGTGTTTAATACCATT TTCACACAAATAGTTTGTCTTCCTTAAAACTGTAAAAGTGAGAATTTACTTGATTTTCATTTTT GTTTTGTTTGATTGTGAAATAAGATTTTGAAAGGTCCAGTTATCTCCAAGAAAAAATATCTATG AAATTGGTTCTGCTTCCTGGCATCCATATTTCTCAAAATTTGTCGTTGTTTCTGAGATAAACAT GGTGATGATATTATGTTGTTTCAATTGGATTTCCTTAGTTAAGTAGGTAGTGGGGAATGGGGAT CAATATAGCAGCAGAGAGTGATGTGGTTTTAGTATGAGGAACATGAAGGCATCAAGGTATCTAA ATTTAATACTCTTGTTTCTACTATGATCTTTCATATTTTTGTATATCGGATCTAGTTAATAAAT GTGATTTCAACAGGGAAGATGCTTGAAAATTACTTAAAGAGAAGCAAATTTTCCATTAAGTTCA TGCTCAGAACATATGCAGTTTCAGGTATATTATTCCACTACAGTCACAGAAGTTATCGTCTCTT TTGTTCATAGCTAATAGACTTCTCAAAATTCTATAGTGATTGAACATGTTTTCTTCTTTGTTTC TTTGTTTCTTTGATTCTTGGATTCTTTGATCTTTGTTTACTTAGTTGCTTCATTGGTTGCTTAA CTTGTTTGTATGTTTCCTTCTTTATCACCTTACTTGTTTCATTGTTTAATTACATGCTAAACTT GTTTTCTCAGTTTTTCCTTCATTGCTAGCTTCTTTACACAACTTGCTTGCTTCCATGATTTGTT TACTTACACAATTAGAGTAATAGTGATGAAAATTTGTGTTGAACTCGGAAAATTACAACTATTT GCAACCTAAGAGTTGACAACAAATCCTTCTAAGACTTCCACAAATGAATAATGTTAGATTTCAT TACTTCTCTCGCAAATCCATTCGCCTCTAAAACATCTCTTCATTGGTTGTTTAACTTATTTGTA TGTTTCCTTCTTTATCACCTTACTCGTTTCATTGTTTAATCACATGCTAAACTTGTTTTCTCAC TTTTTTCCTTCATTGCTAGCTTCTTTACACAACTTGCTTGCTTCCATGATTTGTTTACTTACAC AATTAGAGTAATAAGTGATGAAAATTTGTGTTGAACTCGGAAAATTACAACTACTTGCAACCTA AGAGTTGACAACCAATCCTTCTAAAACTTCCACAAATGAATAATGTTAGATTCCATCGCTTCTC TCGCAAATCCATTCGCCTCTAAAACAATTCTGGAAGAACTCAACTTCTCCTCTATATTCTTCAG CTCTTGGTTGTAGTTTTCAAAATAAATGGTGGCACACCATTTACGAGAATCAAAACAATGCGCT CCAAATTCCTGATCCCGTAAGCGAAATGATAGGTAGACACGTTGATCAGCTGAGTGGATTTCCC ATCATACCGACAGACTCCATTCTTAGGTTTGATATATGTTTCAAACACGTATAAACATCATAAC ATTAATCAATATTTTTTTCACTTGTGTTGGATTCTTTCTTTCTTTGTTCCCTGTATACTTCAAT ATTATCTTAAGAGTAACATAGAATATATGTCATCAGATAGTAGGAAGATTGCTTCAGCCACTAA AAGCGAGAGCTCAACCCCTAGTCCTTCAGCCTCATCTTTCTGCTTCTCATTGGTGAGATCAGTC TCTTTAGTGTAAGGAATATTATTGACTGACCTAAAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.098796965

Conservation Information
Conserved circRNAs	NA
PMCS	0.098796965

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of 1_circ_igg.9

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