Detail information of AT2G33820_circ_g.2


General Information
CircRNA Name AT2G33820_circ_g.2
ID in PlantcircBase ath_circ_016337
Alias 2:14306704-14306892
Organism Arabidpsis thaliana
Position chr2: 14306704-14306892  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G33820
Parent gene annotation Mitochondrial substrate carrier family protein
Parent gene strand -
Alternative splicing AT2G33820_circ_g.1 AT2G33820_circ_g.3
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33820.1:1
AT2G33820.4:1
AT2G33820.2:1
AT2G33820.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATACCGTAAGTACTCATAGACAGTAAAAAAGACAGCATTTCCCGTACATTCTCTTAATAAGGT
TGCCGAACCACCACGAAAGATACCTGTTACagctatgcctccaagaccaccagtgagaactcct
atccccatgtcaaccaagtaaccatctttcagcttagaatcctccaatctcgagtggatat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 189
Transcript exons: 14306704-14306892
AGCTATGCCTCCAAGACCACCAGTGAGAACTCCTATCCCCATGTCAACCAAGTAACCATCTTTC
AGCTTAGAATCCTCCAATCTCGAGTGGATATGATACCGTAAGTACTCATAGACAGTAAAAAAGA
CAGCATTTCCCGTACATTCTCTTAATAAGGTTGCCGAACCACCACGAAAGATACCTGTTAC

Genomic sequence AGCTATGCCTCCAAGACCACCAGTGAGAACTCCTATCCCCATGTCAACCAAGTAACCATCTTTC
AGCTTAGAATCCTCCAATCTCGAGTGGATATGATACCGTAAGTACTCATAGACAGTAAAAAAGA
CAGCATTTCCCGTACATTCTCTTAATAAGGTTGCCGAACCACCACGAAAGATACCTGTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.294446869
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020