Detail information of AT2G29960_circ_g.1


General Information
CircRNA Name AT2G29960_circ_g.1
ID in PlantcircBase ath_circ_015593
Alias NA
Organism Arabidpsis thaliana
Position chr2: 12769886-12770272  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G29960
Parent gene annotation Peptidyl-prolyl cis-trans isomerase CYP19-4
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root, aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G29960.2:3
AT2G29960.3:3
AT2G29960.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACATTTTGACTAAAATCATCGAATCATACCAGCGGATTTGCCGTCGATCTCTACATCGAAGTA
AACCTTGTGAGTAACCTCCTTGAGATCTTCTTTTGCctgtgcacaaagctctgaagttttctgc
aaagaagcaaacacactcacgaattactctcttagatataaagcacacactaaaatagtccaga
accatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGCACAAAGCTCTGAAGTTTTCTGCAAAGAAGCAAACACACTCACGAATTACTCTCTTAGA
TATAAAGCACACACTAAAATAGTCCAGAACCATGATCAAAAACTTCAAAAACCATATAATTGTA
CCTGCAGTTTTAGGAACTGCCTTGCCAAATAGTCCTATAACAACGCGACCTGCGACATAATCAT
AACCAGAGAATCAATCAAACATCAAAACAAACCAAGAATCATCAGCTGTATCTGAGCAACAATC
CATTTTAACAAATCTGTAAGCTTAATGAACAAACATTTTGACTAAAATCATCGAATCATACCAG
CGGATTTGCCGTCGATCTCTACATCGAAGTAAACCTTGTGAGTAACCTCCTTGAGATCTTCTTT
TGC
Conservation Information
Conserved circRNAs NA
PMCS 0.136089493
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017