Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d033776_circ_g.2 |
ID in PlantcircBase | zma_circ_006910 |
Alias | zma_circ_0000527 |
Organism | Zea mays |
Position | chr1: 273334932-273338472 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d033776 |
Parent gene annotation |
Vacuolar sorting protein 39 |
Parent gene strand | - |
Alternative splicing | Zm00001d033776_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d033776_T011:5 Zm00001d033776_T006:5 Zm00001d033776_T004:5 Zm00001d033776_T003:5 Zm00001d033776_T005:5 Zm00001d033776_T008:5 Zm00001d033776_T007:5 Zm00001d033776_T001:5 Zm00001d033776_T009:5 Zm00001d033776_T002:5 Zm00001d033776_T012:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.048985489 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
273338431-273338451(-) 273334980-273338451(-) |
Potential amino acid sequence |
MEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDKLLDMPELARESSDVTDEMESYSLQLQEPDD KSPLEVKKMSHNALAALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLKLSEPYKSKKLSKKR AQTHTSSIAREMATVLDTCLLQALILTGQSSGAIELLKGLNYCDLKICEEFLKERREYMVLLEL YKSNEMHRDALQLLNQLVEESKSEMENTYFNKKFNSQMILEYLRPLCRSDPMLVLESSLYVLER NPSETIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMNDTGINPNLQNELVQLYLSEVLD WYKILKEEGNWTEKTYSPTRKKLISTLESNSGYNTDALLKRLPQDALFEERAILYGKINQHLRA LSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNIYFNLLQIHLNPRKAEKEFEQKIIPVASQYS GIQKASATKPKGGRVGKKVVEIEGADDIRFSPSGTDSGRSDGDGDDVNDRGPIMLNEALELLSQ RWDRINGAQALRLLPRDTKLQIWTLFVR*(-) MVLRLLGCYQEILNSRYGHFLFDNGSYEEAMEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDK LLDMPELARESSDVTDEMESYSLQLQEPDDKSPLEVKKMSHNALAALVKYLQKKRSGIIERATA EVTEEVVSGAVHHSLKLSEPYKSKKLSKKRAQTHTSSIAREMATVLDTCLLQALILTGQSSGAI ELLKGLNYCDLKICEEFLKERREYMVLLELYKSNEMHRDALQLLNQLVEESKSEMENTYFNKKF NSQMILEYLRPLCRSDPMLVLESSLYVLERNPSETIELFLSENVPADLVNSYLKQHAPNLQSTY LELMLSMNDTGINPNLQNELVQLYLSEVLDWYKILKEEGNWTEKTYSPTRKKLISTLESNSGYN TDALLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNI YFNLLQIHLNPRKAEKEFEQKIIPVASQYSGIQKASATKPKGGRVGKKVVEIEGADDIRFSPSG TDSGRSDGDGDDVNDRGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQIWTLFVR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |