Detail information of Zm00001d033776_circ_g.2


General Information
CircRNA Name Zm00001d033776_circ_g.2
ID in PlantcircBase zma_circ_006910
Alias zma_circ_0000527
Organism Zea mays
Position chr1: 273334932-273338472  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d033776
Parent gene annotation Vacuolar sorting protein 39
Parent gene strand -
Alternative splicing Zm00001d033776_circ_g.1
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d033776_T011:5
Zm00001d033776_T006:5
Zm00001d033776_T004:5
Zm00001d033776_T003:5
Zm00001d033776_T005:5
Zm00001d033776_T008:5
Zm00001d033776_T007:5
Zm00001d033776_T001:5
Zm00001d033776_T009:5
Zm00001d033776_T002:5
Zm00001d033776_T012:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGTACAGAGATAACACGTAAGTAATGTCCACATGTGAATCTGAAAACTGTTCCATTGCCTCC
TCATAACTCCCGTTATCGAACAAAAAGTGTCCATATctggagtttagtatctcttggtaacagc
ctaagagcctgagcaccatttatcctgtcccaccgttggctcaacagttccagtgcttcattta
acattata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAGTTTAGTATCTCTTGGTAACAGCCTAAGAGCCTGAGCACCATTTATCCTGTCCCACCGT
TGGCTCAACAGTTCCAGTGCTTCATTTAACATTATAGGGCCTCGGTCATTTACATCATCTCCAT
CACCATCACTTCGGCCACTATCTGTTCCGCTGGGGCTAAAGCGTATGTCATCAGCCCCCTCAAT
CTCTACAACCTTTTTACCTACGCGACCCCCTTTGGGCTTAGTAGCACTAGCCTTTTGGATTCCA
GAGTATTGTGATGCAACTGGAATAATTTTCTGCTCAAATTCCTTTTCAGCTTTTCTTGGGTTCA
GATGAATCTGTAGAAGATTAAAATAGATATTTGATTTGGACGGTTGTTGTTCTCTTTCTTCATA
AACACGGTCACAATATGCAACTGCTCGCTCTGGCATCTGAAGCTGCAGTGGCACAAAAGATATT
TTGGATAACCTAAAAAAATAATGCTTAACCAGAACTCAACAATGTCAATGGATCAAGGCACACA
AAAGCAAATACCTTGTGAACATAGAGAGAGAGAGCTCTGAGGTGTTGATTTATTTTCCCATACA
ATATAGCTCGCTCCTCAAAAAGAGCGTCCTGGGGAAGGCGCTTAAGAAGTGCGTCTGTATTGTA
ACCTGAATTGCTCTCCAACGTAGATATTAACTTCTTCCGTGTTGGGGAATATGTCTTCTCTGTC
CAGTTTCCCTCTTCCTTCAGAATCTTGTACCAGTCTAGAACTTCAGAAAGGTACAGTTGTACCT
TCAGATCAGAAGATCCAAATGTCAGAACATTATCCATGCATTAATTGTACTGTGAACTTTGTAT
GATCAGGTTAAGGAAACAAAATCATCTAACAAGCATGAAATGAATTGATTAAATATGAATTTTC
CAGAATACTAACACAATAACAATTGAAACTGTATATACCAGCTCGTTTTGCAGATTAGGGTTGA
TCCCAGTATCATTCATTGAGAGCATTAGCTCTAAGTAAGTTGACTGCAAATTTGGGGCATGCTG
CTTCAGATATGAATTTACCAAATCTGCTGGAACATTTTCAGACAAAAAGAGCTCAATAGTTTCT
GATGGGTTGCGCTCAAGGACGTACAAGGAAGACTCTAAAACCAGCATTGGGTCAGATCTACAAA
GGGGCTGGAAATGAAAATGAAATCTCGAATCAGACATATAAAAGTATTAATTTGTGGCAGAAAG
CAAAATGATTTCAAGACATCAAAGCAAAGATCCAAATGATAAGCTTTAAAAGATATCAAGAGAT
ACACAGTAAAATATCACTATGCAGCCAGTTTTGCTAGTACTAACGATCAATTGTTGGAGGACAA
CAAAAGCGTGAAACAGAACATGATAGTATATTGAGCAATTATATGTAATCCTACCACATATCAA
ATAAGCTTTCAAGTATACAAACTGTTTGGCCTACTGATCGAAGAGACATCATGCAGTTGGATAT
AATTACAAAATATGCACAGAGAAACTAGTAAACATGAGTCACACCTTGAATTTAATATTTTAAT
AGTGCCTTAAAACTTAACCTGTTAAGTTATCAAAATAAAGCATAATTATTCATGAACCCATCTA
GCTTGTAGAAACAGTGGTTATGCAGCAGATAGAACACCATTTAGCAAGGCATGTAAGATATTTG
AGGATCATTTGAGCTAAATGCGAGCAAAAGGACATAGAAATAATACCCTGAGATATTCAAGTAT
CATTTGAGAGTTAAATTTTTTATTAAAATATGTATTCTCCATTTCAGATTTTGATTCTTCAACT
AATTGATTGAGTAGTTGGAGAGCATCACGGTGCATTTCATTGCTTTTATAGAGTTCAAGTAAAA
CCATATATTCTCTCCTTTCCTTCAAAAACTCTTCGCATATCTTCAGGTCACAATAATTGAGTCC
TTTCAACAACTCTATTGCCCCTGATGACTGCCCAGTAAGAATAAGAGCTTGAAGCAGACAAGTA
TCCAGTACAGTTGCCATTTCTCTAGCAATAGAGCTTGTATGTGTCTGAGCTCGTTTCTGAAAAT
AAAAGAGAAATTGATTGGTAAATAACTGATATATTGTTAAATTGCAACCATCTACACAATTGAA
AGACACCATGCACACTAACAAGTAACAAGTTTACAGTGTCTCAGAAATTTTGGATGCAGTATCC
TGACCCATGACCAAAATCTACAGCTATATTCCAGAAATGCAATCCATTATGGACCAAGTCCCAA
GATAATTGAAAGTTGCCCAGTTTCTAGCTCAGGTTACCATATGTCCTTAATATTTCTAAGTATT
CCAGTTTAACTCAGTTTAACTCCTACATAAACGAACCCATATAGCCGCTTACTTTCTTCCATTC
TAAATTTACCCTGACCTAACTGTACAAGACACTGAAACACCCCCAACAAACCAATCTAGAGACC
AAGGAACGAAACTTCCACACTTCTGTCAAAAAAAGAACCAAACAATTTTCTGTCTAGGGATCCT
AAAATGAATTTGGTTGTAGAAAAGGCAAGCTGCAGTTCAAAGGTCAATAAACAAATAGCATTGA
AGCAAACACCAATTCTAGTGTCAAGAATCATTCTCGGTCTCATATAAATATATGAAATGGGATA
TACTTATACTCCAAAAATCAGGTCATGTTAATATCTAGTCAGTTTCAAGTTCGTTCTACTATGT
ATATGTTTAAAAAAACTCGACCTGTGGGGGGTAAAACAGCCCTCTTGCATTGTATTAACTATTA
AGAAGACCTTCATGCAGGTCGAGAAAAAATCCCGGACCCCTGCTCCACCCATACACAACGGCAT
TATAGCCCATATGAGAACGACCATGACCAGGGCCGGACCTTGGACCTACGTTTTGGTGTGGAAT
GGATGAGGGGATTTTTTTAGCCGTAGCTTGAAAATTTGATCCCATGGAGAGTCAAACCTAGGAC
CTGAGTAGTGCTACTCAAGACTCACTCAAGCGGTCAAGCCACCAAACCTACTCAGATAGAGACT
CCATCACCTGTGCATATATTATTAGTTTTTGATCCATGCAATTCCACATCTGTCACCAATTTCT
ACTAGTTAACTTGCAGCAAGACCAAAACAGAACTTGAAAAGTCACTACCTTGCTCAGCTTCTTT
GACTTATATGGCTCAGATAATTTTAAGCTGTGGTGAACAGCTCCAGAGACCACCTCCTCTGTTA
CTTCAGCCGTCGCTCTCTCAATTATGCCACTTCTTTTCTTCTGCAAATACTTCACAAGGGCAGC
TAGAGCATTGTGACTCATTTTCTTTACCTCCAATGGAGATTTATCATCTGGTTCTTGAAGCTGT
AAAGAGTATGATTCCATCTCATCTGTCACATCGGAGGATTCCCTTGCTAATTCTGGCATGTCCA
GCAGCTTGTCATGATCACCTATAATATTTGTTTGAGGCAGAACAATAGATGGGTACAGAGATAA
CACGTAAGTAATGTCCACATGTGAATCTGAAAACTGTTCCATTGCCTCCTCATAACTCCCGTTA
TCGAACAAAAAGTGTCCATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.048985489
Functional Information
Coding potential Y
Potential coding position 273338431-273338451(-)
273334980-273338451(-)
Potential amino acid sequence MEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDKLLDMPELARESSDVTDEMESYSLQLQEPDD
KSPLEVKKMSHNALAALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLKLSEPYKSKKLSKKR
AQTHTSSIAREMATVLDTCLLQALILTGQSSGAIELLKGLNYCDLKICEEFLKERREYMVLLEL
YKSNEMHRDALQLLNQLVEESKSEMENTYFNKKFNSQMILEYLRPLCRSDPMLVLESSLYVLER
NPSETIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMNDTGINPNLQNELVQLYLSEVLD
WYKILKEEGNWTEKTYSPTRKKLISTLESNSGYNTDALLKRLPQDALFEERAILYGKINQHLRA
LSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNIYFNLLQIHLNPRKAEKEFEQKIIPVASQYS
GIQKASATKPKGGRVGKKVVEIEGADDIRFSPSGTDSGRSDGDGDDVNDRGPIMLNEALELLSQ
RWDRINGAQALRLLPRDTKLQIWTLFVR*(-)
MVLRLLGCYQEILNSRYGHFLFDNGSYEEAMEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDK
LLDMPELARESSDVTDEMESYSLQLQEPDDKSPLEVKKMSHNALAALVKYLQKKRSGIIERATA
EVTEEVVSGAVHHSLKLSEPYKSKKLSKKRAQTHTSSIAREMATVLDTCLLQALILTGQSSGAI
ELLKGLNYCDLKICEEFLKERREYMVLLELYKSNEMHRDALQLLNQLVEESKSEMENTYFNKKF
NSQMILEYLRPLCRSDPMLVLESSLYVLERNPSETIELFLSENVPADLVNSYLKQHAPNLQSTY
LELMLSMNDTGINPNLQNELVQLYLSEVLDWYKILKEEGNWTEKTYSPTRKKLISTLESNSGYN
TDALLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNI
YFNLLQIHLNPRKAEKEFEQKIIPVASQYSGIQKASATKPKGGRVGKKVVEIEGADDIRFSPSG
TDSGRSDGDGDDVNDRGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQIWTLFVR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b