Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d033776_circ_g.2 |
| ID in PlantcircBase | zma_circ_006910 |
| Alias | zma_circ_0000527 |
| Organism | Zea mays |
| Position | chr1: 273334932-273338472 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d033776 |
| Parent gene annotation |
Vacuolar sorting protein 39 |
| Parent gene strand | - |
| Alternative splicing | Zm00001d033776_circ_g.1 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d033776_T011:5 Zm00001d033776_T006:5 Zm00001d033776_T004:5 Zm00001d033776_T003:5 Zm00001d033776_T005:5 Zm00001d033776_T008:5 Zm00001d033776_T007:5 Zm00001d033776_T001:5 Zm00001d033776_T009:5 Zm00001d033776_T002:5 Zm00001d033776_T012:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.048985489 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
273338431-273338451(-) 273334980-273338451(-) |
| Potential amino acid sequence |
MEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDKLLDMPELARESSDVTDEMESYSLQLQEPDD KSPLEVKKMSHNALAALVKYLQKKRSGIIERATAEVTEEVVSGAVHHSLKLSEPYKSKKLSKKR AQTHTSSIAREMATVLDTCLLQALILTGQSSGAIELLKGLNYCDLKICEEFLKERREYMVLLEL YKSNEMHRDALQLLNQLVEESKSEMENTYFNKKFNSQMILEYLRPLCRSDPMLVLESSLYVLER NPSETIELFLSENVPADLVNSYLKQHAPNLQSTYLELMLSMNDTGINPNLQNELVQLYLSEVLD WYKILKEEGNWTEKTYSPTRKKLISTLESNSGYNTDALLKRLPQDALFEERAILYGKINQHLRA LSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNIYFNLLQIHLNPRKAEKEFEQKIIPVASQYS GIQKASATKPKGGRVGKKVVEIEGADDIRFSPSGTDSGRSDGDGDDVNDRGPIMLNEALELLSQ RWDRINGAQALRLLPRDTKLQIWTLFVR*(-) MVLRLLGCYQEILNSRYGHFLFDNGSYEEAMEQFSDSHVDITYVLSLYPSIVLPQTNIIGDHDK LLDMPELARESSDVTDEMESYSLQLQEPDDKSPLEVKKMSHNALAALVKYLQKKRSGIIERATA EVTEEVVSGAVHHSLKLSEPYKSKKLSKKRAQTHTSSIAREMATVLDTCLLQALILTGQSSGAI ELLKGLNYCDLKICEEFLKERREYMVLLELYKSNEMHRDALQLLNQLVEESKSEMENTYFNKKF NSQMILEYLRPLCRSDPMLVLESSLYVLERNPSETIELFLSENVPADLVNSYLKQHAPNLQSTY LELMLSMNDTGINPNLQNELVQLYLSEVLDWYKILKEEGNWTEKTYSPTRKKLISTLESNSGYN TDALLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQMPERAVAYCDRVYEEREQQPSKSNI YFNLLQIHLNPRKAEKEFEQKIIPVASQYSGIQKASATKPKGGRVGKKVVEIEGADDIRFSPSG TDSGRSDGDGDDVNDRGPIMLNEALELLSQRWDRINGAQALRLLPRDTKLQIWTLFVR*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |