Plant Circular RNA Database

Detail information of Os05g0363100_circ_g.7

			
						 General Information
					
						CircRNA Name
						Os05g0363100_circ_g.7
					
						ID in PlantcircBase
						osa_circ_027614
					
						Alias
						Os_ciR300
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 17342447-17342852  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ
					
						Parent gene
						
							Os05g0363100						
					
						Parent gene annotation
						
							Similar to Monoglyceride lipase. (Os05t0363100-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0363100_circ_g.5 Os05g0363100_circ_g.6 						
					
						Support reads
						111/13/41
					
						Tissues
						root/root/shoot, root, anther, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0363100-01:2

General Information
CircRNA Name	Os05g0363100_circ_g.7
ID in PlantcircBase	osa_circ_027614
Alias	Os_ciR300
Organism	Oryza sativa
Position	chr5: 17342447-17342852 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, circRNA_finder, circseq_cup, find_circ
Parent gene	Os05g0363100
Parent gene annotation	Similar to Monoglyceride lipase. (Os05t0363100-01)
Parent gene strand	+
Alternative splicing	Os05g0363100_circ_g.5 Os05g0363100_circ_g.6
Support reads	111/13/41
Tissues	root/root/shoot, root, anther, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0363100-01:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							Yes							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							F: ATCTACCAGGACAAGCCCAG
 R: GAGTCGATGACGTCCTTGGT
PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							Yes							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							F: CCGTTGGTGGTGACGCTCCT
 R: GATGCGGCTTCACCTTCTCC
PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	Yes Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	F: ATCTACCAGGACAAGCCCAG R: GAGTCGATGACGTCCTTGGT PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	Yes Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	F: CCGTTGGTGGTGACGCTCCT R: GATGCGGCTTCACCTTCTCC PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTG
CGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAGatatcggagaaggtgaagccgcatccgt
tggtggtgacgctcctgacgcaggtggaggagatcatccccaagtggaagatcgtccccaccaa
ggacgtca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 146
Transcript exons: 17342447-17342497,17342758-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGGAAGAACAAGCT
GATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTC
GAGCAAAGCTTGTCACAG
Transcript length: 180
Transcript exons: 17342447-17342579,17342806-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 186
Transcript exons: 17342447-17342579,17342800-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGCGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 201
Transcript exons: 17342447-17342580,17342786-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGC
TTGTCACAG
Transcript length: 201
Transcript exons: 17342447-17342582,17342788-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAAACCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGC
TTGTCACAG
Transcript length: 206
Transcript exons: 17342447-17342582,17342783-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAAACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGC
AAAGCTTGTCACAG
Transcript length: 215
Transcript exons: 17342447-17342579,17342771-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCA
GCGTCGAGCAAAGCTTGTCACAG
Transcript length: 216
Transcript exons: 17342447-17342563,17342754-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAATCAGGAAGAA
CAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATC
AGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 217
Transcript exons: 17342447-17342576,17342766-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCAT
CAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 219
Transcript exons: 17342447-17342577,17342765-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGC
ATCAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 224
Transcript exons: 17342447-17342569,17342752-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCAGATC
AGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAA
CCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 237
Transcript exons: 17342447-17342584,17342754-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAAAAGATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTG
GAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
Transcript length: 239
Transcript exons: 17342447-17342584,17342752-17342852
ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAAAAGAGATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGC
TGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
						
					

						Genomic sequence
						
							ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA
TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA
GCGCGAAAAGGTTCAAACGTTTGAGCAATTCACCAATTTGTATTGTCAGAATGCAAGATTCAGA
CCTAATCATGCTGCGAGATCTTGTGTGTTTTGAGCAAAGAATGTAGGAAAAAGAGAGAGAGAGA
GAGAGAGAGATTCTGTTTTCTGAAACTGTTTTCTTGTGAACAATTGAGCAGATCAGGAAGAACA
AGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAG
CGTCGAGCAAAGCTTGTCACAG
						
					

			
		

Sequences
Splice junction sequence	GATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTG CGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAGatatcggagaaggtgaagccgcatccgt tggtggtgacgctcctgacgcaggtggaggagatcatccccaagtggaagatcgtccccaccaa ggacgtca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 146 Transcript exons: 17342447-17342497,17342758-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGGAAGAACAAGCT GATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTC GAGCAAAGCTTGTCACAG Transcript length: 180 Transcript exons: 17342447-17342579,17342806-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 186 Transcript exons: 17342447-17342579,17342800-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGCGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 201 Transcript exons: 17342447-17342580,17342786-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGC TTGTCACAG Transcript length: 201 Transcript exons: 17342447-17342582,17342788-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAAACCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGC TTGTCACAG Transcript length: 206 Transcript exons: 17342447-17342582,17342783-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAAACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAGCGTCGAGC AAAGCTTGTCACAG Transcript length: 215 Transcript exons: 17342447-17342579,17342771-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCA GCGTCGAGCAAAGCTTGTCACAG Transcript length: 216 Transcript exons: 17342447-17342563,17342754-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAATCAGGAAGAA CAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATC AGCGTCGAGCAAAGCTTGTCACAG Transcript length: 217 Transcript exons: 17342447-17342576,17342766-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCAT CAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 219 Transcript exons: 17342447-17342577,17342765-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGC ATCAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 224 Transcript exons: 17342447-17342569,17342752-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCAGATC AGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAA CCAGCATCAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 237 Transcript exons: 17342447-17342584,17342754-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAAAAGATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTG GAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG Transcript length: 239 Transcript exons: 17342447-17342584,17342752-17342852 ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAAAAGAGATCAGGAAGAACAAGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGC TGGAGCTGCTGCGAACCAGCATCAGCGTCGAGCAAAGCTTGTCACAG
Genomic sequence	ATATCGGAGAAGGTGAAGCCGCATCCGTTGGTGGTGACGCTCCTGACGCAGGTGGAGGAGATCA TCCCCAAGTGGAAGATCGTCCCCACCAAGGACGTCATCGACTCTGCCTTCAAAGACCCCATCAA GCGCGAAAAGGTTCAAACGTTTGAGCAATTCACCAATTTGTATTGTCAGAATGCAAGATTCAGA CCTAATCATGCTGCGAGATCTTGTGTGTTTTGAGCAAAGAATGTAGGAAAAAGAGAGAGAGAGA GAGAGAGAGATTCTGTTTTCTGAAACTGTTTTCTTGTGAACAATTGAGCAGATCAGGAAGAACA AGCTGATCTACCAGGACAAGCCCAGGCTGAAGACGGCGCTGGAGCTGCTGCGAACCAGCATCAG CGTCGAGCAAAGCTTGTCACAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006193* osi_circ_015375 						
					
						PMCS
						0.640942488

Conservation Information
Conserved circRNAs	osi_circ_006193* osi_circ_015375
PMCS	0.640942488

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17342573-17342776(-)
						
						Potential amino acid sequence
						
							MGSLKAESMTSLVGTIFHLGMISSTCVRSVTTNGCGFTFSDICDKLCSTLMLVRSSSSAVFSLG
LSW*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17342573-17342776(-)
Potential amino acid sequence	MGSLKAESMTSLVGTIFHLGMISSTCVRSVTTNGCGFTFSDICDKLCSTLMLVRSSSSAVFSLG LSW*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Ye et al., 2016;Chu et al., 2017

circRNA

Detail information of Os05g0363100_circ_g.7

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