Detail information of 2_circ_ag.4


General Information
CircRNA Name 2_circ_ag.4
ID in PlantcircBase ath_circ_013686
Alias NA
Organism Arabidpsis thaliana
Position chr2: 7888639-7893248  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT2G18150_circ_g.1 AT2G18150_circ_g.2
Support reads 93
Tissues root, aerial, inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACAACTTCAAACCCGCGAGCCGATCTGCTGTTCGGGTTAGAGTTCTTCTCAGTAACTATACT
CCCACTGGTGTCTAGAAGCAACGATCCATCACAACCctgaacgaaacaatcgtggaaatggagc
ctcatgagagaagcagccatacgagtctccctttcaaatgccttggctacaacggacctcacga
tctcctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAACGAAACAATCGTGGAAATGGAGCCTCATGAGAGAAGCAGCCATACGAGTCTCCCTTTCA
AATGCCTTGGCTACAACGGACCTCACGATCTCCTCCGCTCTAGGGCACGAGCTCCTGTAGAAAT
CTGGGAAGAGGTTCCTTTTGTTGCCGCCAAAGTTACTCGCGTTGTCACAGATGCAGAGAGTAAG
AGCGTAAGTGAGAGACAGAAGAATGAGAAAGCTCCCGATTCTTGCCATTTTCAATTGTCGCTAG
CTAGATCAAGAAATAAGAAAGGAGATGACTTTGTGATGATAAGAGAAGAAGAATCGACTTGGTA
CCTTGATTGGAATTAATCAATTAAGTAGATATAAATCAATTTATATACAGAGAGTTTGGCGTCA
TGAAGAGGAACAAACAAAGGCAATAGACTTGGTACCTTGATTGGAATTAATCAATTAAGAAGAT
ATAAATTAAAAATGACAATAATTTTTAAAAATACAGAGAGATCGTGGATTTAAATTTTGGTTTT
TAAAATTACCACTATTAGTTTAATATTTAGAGAGTTTAATAATTATAAAAATATCAATTACATT
TTAGTTTTCCAAAGATACCACAAAACTAAATTAAACTTTCAGTATTCAAAACTAAGGCCCTTAA
ACTATAAACACAAAATTTTAACCCTTAAAAAAAATACTCTAAATCTAAAATAGGTAACCCAAAC
CTAAAAACAATATTTTGAATCTTTGAACATCAATTTTTGATGTTGTGATATTTTTGAAAAACAA
AATATTTTGATAGTATTTTTGGAACATTAAATTAATAGTAGTATTCCTGACAACAAAATTTAAA
AGTGTGGTATTTTGAAGAATTGTTATTGAAAAAATGGCTTGAATTCAAAAGGACTAAATCTTGG
GGTTTGGTATCCAAATGTCGCAAAGTTGCACGAGTTGTTTGACTATTTTACCGTCATTTCGGTT
ACATTGCTGGTTTAATGGTTTTTATAAAGTTGTTTGACCAAGTGTTATTAGCTCAATTAATATT
CGATGCAAAGTTTAGATATCGTTGGTTCGAGTGACGTTTGGAACGAAACTAATATTATATGTTA
TGATTTCAGGTCTGGTAGGATTACGGGCTTTGTCCCAGAACCTTCAAATATTCAAAAAAAAATA
AAAAATTGTTTGGTCGGAAAAAGATATATGTTTTTAACTTTTTACGGTTAAAACTAATTTTTTT
GTTTGAAAGAGCAAAAATAGAACCAAAAGTTAGAAGTAGTAGTGATTAAAAAGATTAAAATAAA
CTTTGTAACAAATAGATGGTGATTAAAAGGTTTAAATAATCCATTTATTACCACCAGACAACGC
TAATACATTTGTAAATTTTGAATAAAGATTATATATATATATATATATATATATATATCAACAC
ATGAAGTAAACATTTAACATCGTTCAGTGATTTTGTAATGCCTGTTAATGGCTATTAAGTCGTA
GGCTCAAATCTATCCATAATTCAAAGATGAATTTTTTTAATTATATATATTTTAAATGGGATAT
TTTTTCCAACTAAAATATTTGGCGTACTAAACGTCCAATAAAAAATATATGGATTCTTTTTAGT
ATATTTTTCCTGTTTAAATTTACCAATGTTTACTGATTACATTATGAGCATTAAAAGTTGTTAA
GTTGCAAGTAGGGGCGGACCCACGTCTAGAGGGGGTTGGGCACGTGTCCGACATTCTTTTTCAG
GAAAAACAAAATTACACATTGAATTCATTTACTGATTATATATTTTGGGCCATTAGAATAGAAA
ATGAATTGCCCTATCCTAATGTCCAACCCAACTCAATTAAAACGAAAATAATATTTCAGCCCAA
AACAATTAAACAGAAAAGCTCATAAAAAATATGTCTCAGTCCTAAGACAAAAATAATAACCGAC
GGAAAGAAGAGGCATCATTGAGTACATTGACCTACTTTTTTCATTCGTTAACTAAATTTTATAA
ATTATTTTCTTTGTTGGTTTCTTCTCAATTTTAAGGCACTCAGCGACATATATCTAAAGTAAGT
AATTTTAGTGATTATTTTATGATTAATTAATACTAAAATTGTAGTAGATGATTGAAATCATTCG
TATGTTCTTTTCTATAATTTGATAATTCATTCGTAGACAAATTTCTAATCTAAATTTGGTTTCT
TCAGAAGTTTAGGGCCGATTTAGACAAGAGAAGATGCGTCTGTTGAGTTGGATATACATCTTGA
ATAGTATATTCAAGATGAGAATGTGAAGACAAAGTTTTCTTGTCCATAAACAAAAAAGAAATTT
GTCAATATTTATTTTTAGTAGAATAGGAAATTCCAATTGGTGTGGAATAAGAAAATTGTCAATT
GTAAGGTTTAGGGTTGAGCAATTTTTATAAATTTCAAAAAACTGTTTCATGAAGACTTACAAGC
TTAAATGTATTCTCGAGAGATGTACACAAGGTGTGGCGTCGCTCCACCAAAAATGATGCAAGAT
TGGTAGTTTGGTTGTGGGAGGTTGTTACTATTTCAATAACATTCATTGTAATTCTAGAGAAGAA
TAGTGAATGTCCTATAGCAATTTGCGGCCTTTTGTAGTGAATGAATTCTAAACTAGGTCCCTAA
GATGTACATAAAAGCTATCTCCTTTAACAAATTCTGTGTAGTTAACATATTCGCACTCCAACAT
ATAAGTAATTGAACCTATAGGCTTAGCCACAAATATGAGTTTTGACATGTTCTATAACCAAAAT
CGACACAACAAAAGATCTTAAAATATATGTAGAGAAATATACTGTGAACTATGCCTTGTACGGT
ACATAGAATTTTGGCGTTTAAAACATCGTGTTTGCTACTAGGCAAGTACAACCACAAGTATTCT
ACTATGAAAATTTTAAAGCTTAACATATTTACTAAACAGTAGATTAAGTCATGGCTATGTTAAG
CTAACATATTACAAACGATTTTTTGTTTTCTCGATCAGTCATATATATATATTATTTATAACTT
GAACGATGCATGGAATATCTTCAAAAATACATCACATCGTGTATAATATATGCATGGAATAACT
AAATGTGGAGAAGCAAGCATGCCCCTATATGTCATCATTGAAATCGTGTAGACACAGACCAACT
TTGGATTTCTATAATAGGATTCAAAGAGGAAAAGGATAAAACTAATAGATAAACATATGCCTTA
TTCACTCACATATACAACTGGACAATGAATTCGTCGAGATGCATATTTTTTTTTTTCAAAATTT
CGTCGACATATTTAGAAAAGAAAAATGCAAAAAAGAAGGTGAGAATATGTTCGGCCAATTTCCT
TCAAACCTAATTATTTTAAAAGATTATAGTTAGGATATCAAATATTTAGACACTACATTTTTTA
AGATTTTCCATGATGTTATTTTATTTTGTTTTCATATCTCGTTATTTCTGGTCGACTTTCATGA
CCTATAGAGTTTCCATAAGGCCTTAAACAAACGTAACTGTAATAACATTTTAATTATAGATAGT
TTCAATCATTTAAACTTACAAAATTCAAATTCTTGACACAAAGAAATACAGACTCATACAATAT
AAAAAAAAACATAAACATAAATTCCTTCCTCCAAAACATGTCACATTTCTATTTCTCCCATCCG
ATACTAGGAAATCAAGAGTTATTAATTTTCCTGCAATTCTTTCTGATCTCACCACTCGAACCTG
TCAAGGGAGAGATATTCCCCATCTTGATCATCGACTCCGCGAACTGCTCGAAGAACTCTTCTTG
ATCCTCTGCATACTTCTTGACGAGCTCTCTTGATTGCTCATTGCTAGAGAACAAGACCTCGTCG
GAATTCAACAGTCCCATGTTCTCGATCAAGTTCTTGAAGTAGCTGTTATCAAATCTTCCAGCGC
TGTTGATGTCAAGCTCTGACAGGTTCTGGTCCCCACCCGATCTAGGGCACCTTTGGCGCAAGTT
AGCAGCGTAGGATTGCTCTAAGGTTCTGTCGGGACTTCCGTTTCCGGATTGGTTGTACAGTCTC
TGTCTGAAACTAGTGCATCTTGAAAATCCAATGGTGTGGCTCCCTGAAAAATTGAGGTCAAATT
ATGATAAACCCGTTATTAAGGTTCAACTTAGCTTTAGAAGCAAGTAAATTTCTTCCTTGTGTGT
TAAGTAAGCTTACCGGAGAGAGCAACAACGTCGGTGAGATCGAGACCTTGGTTGTTAAATCTCG
TGACAATTGTGTTGAAAGTGTTGTTGGGTGCAGGAATGTTGTTGTTTGATCCACTCAAGCTTGC
ACTTGTCGAATCTCTTCTTCCCAAAGGAACCATCCAGCTTGGTCCACCAGTCTACACACAAACC
GAACCAAATTAGATGTTGAGAACTTAAAGAAGCAATAGAGAGAGACAGAGAAAGAAAGCGACTT
ACAAGAACAGAGGAGTCTCTAGCGGCTAGAGTTAAGGCATCAGCACAAGAAACAGTGTTAGGGC
ATTCGTTCTCTAATGCTGCCTTGATCTCGTCAACAACTTCAAACCCGCGAGCCGATCTGCTGTT
CGGGTTAGAGTTCTTCTCAGTAACTATACTCCCACTGGTGTCTAGAAGCAACGATCCATCACAA
CC
Conservation Information
Conserved circRNAs NA
PMCS 0.534740481
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs ath-miR5021
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017