Detail information of Solyc11g008540.1_circ_igg.2


General Information
CircRNA Name Solyc11g008540.1_circ_igg.2
ID in PlantcircBase sly_circ_003252
Alias NA
Organism Solanum lycopersicum
Position chr11: 2714994-2719800  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc11g008520.1_circ_ag.1 Solyc11g008530.1_circ_igg.1 Solyc11g008540.1_circ_igg.1 Solyc11g008540.1_circ_g.1
Support reads 3
Tissues fruit
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGTGATTCGATTTGATCCATCAGCTACTGTTTGTAGCTTTATACAATCACGTGGACGAGCTCG
AATGCAAAACTCCGACTTTCTTCTGATGGTCAGAGAagaacaatcaatggagccaactgatgtt
gcagtctctgaagaccaacagctctctgctgaccctctgccttttgcaagaaggttggcatctt
acatttat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAACAATCAATGGAGCCAACTGATGTTGCAGTCTCTGAAGACCAACAGCTCTCTGCTGACCCT
CTGCCTTTTGCAAGAAGGTTGGCATCTTACATTTATTTTCTCTTTTAATGGAGTTAGGAAAAAA
TATTGATTGAAAAAAGATTTTTTTTTAAGAAAATGAACTTCTGTAATGTACATGTTGATTTGTT
ATGTATAGTTATCAGTTGGAAGCTCTGGAGACAGCATTAAAGCAGAACACCATTGTTTACTTAG
AGACTGGTTCTGGAAAGACCTTGATTGCAATTATGCTTCTTAGAAGCTATGCTTACCTTCTTCG
GAAGCCGTCTCCGTACATAGCTGTTTTCTTGGTCCCGACCGTTGTTCTGGTGACTCAGGTAGTA
CTTCTAGCTTCTCAATCTAGTCCCTTCAAGTTCATCATCTTAATGTGTATATTTCTATTATCCA
CTAATTTCTCTCCAGTATAACGATTGTAGAATTAATTTTTCCCCATTAGTTTTCTTATGTTATG
CAGTTTGTTATATGTTTGAGGCAGCTTGGTTTTAGGTTCAAAACTGTGCATTTGAATTATCCTA
ATGTTGTTGATCTTGTGATTTGATAATTACAAGCAAGGAGATGCTCTGATGTTGCATACCGACT
TAAAAGTGGGCAAATATTGGGGAGAAATGGGCGTTGATTATTGGGATGCTTCTACATGGCAACA
ACAAGTGGATGATCATGAGGTGTGTATGAACTATATTTTATCTTCAGTGACAAATTATTAACTG
TAGCTTGAGTTCTTAAAAGAATTCCAGTCCTAAAGTTACTGAACAACTAGATGGGAATAAAATG
GAAATGACTTGTTTATCAATCCTCTCAATTGCCTGAAGTAATGGTAGATGGAGTATATGCTTCT
ATGCTAAAGTAAAGCCTGCATTTATATATTAATGCCCACAGCTGAAGGGTCAAGCCCGCCACAA
CCTAACTCTGACCTTTAGGGTTTGTATAGTTGGTGGGATAATGGATAACAATCCGGGATAAAAT
TTGAGATTATATCACTCGCATTTGGTTATGAGTATTAATTACTCCCAGAATACATTTTGTACTT
AAATAGTGGGATATCCAAACCCATGTGATATACTTCTCTATCCCATTCCGGTAACCATTCGATC
AAAATTGCAGTGAACCGTAGCAACATTTTGTACAGATCAGTTAAGGAAAAGAAATGATTGTAAA
GTCTATTGAAATTAGCTGCTCATATTTGCTGGTATTGGGATCTCGTGGAATAGTAATATGCTAA
TTGCTATTCTCCAAGGGAAGTTGCTAATGAGCTGCTGTTGTTAAGATTCTTTTTTTTTCTTGGA
AGGGCTCTCTTCGAATATATTAGATCTGACGTTCAGCATTTATATACTAGAAATTAAGTTAGGC
ATTATATATTTATTACATTAAGATGCTTCATGAGTAATCACTGCAGGCTTGTTTTTCAGGTACT
TGTTATGACTCCGGCAATACTACTTGCTGCTTTGAGGCACAGCTTTTTACAAATAGACATGATA
AAAGTTATAATATTTGATGAGTGCCACAATGCCCGAGGCAAACACCCCTATGCCAGCATAATGG
TGGTACGTTGTTTTTGCTAAGATTGAATTTTCTGTAGGATAGTTTTTTGAGCTAATTGTTGATT
ATATTTTCTGAAGTAGTGCAATTTCTTCATCTGCACAATGTTGTTATATGAACTCTCTCGGTTC
CCTACTTCGCAGCAACAGTACCCTACTTTTGTCATTAAGCAGAAAGGATGAGCAGCTTTATATC
AACTACAATTGATTTGTTTGTTGATGGATGTCATAATTATTGTGTAGTTACTGCCACTTCAACA
ATATTTCATTTCAAAAGTTTACCGAAAGGAGATATTAGAGAGAATGCGTGAAGACATCTATAGT
GGATGAATTCTTTTGCATGCACACTATGTGATGTGTACATTTACCTGATGTGGAATCCCCTGTG
GGCATGTCATTGGTTCTTTTGTACATGTGACCCACATAAGAAAAGATTTAACTAGAATCCTGCT
TGAGCATGACTTGGTATGCTGCTTGAATGATTCTTATCTTAGAGGGTTAATATTCTTTCAGGAG
TTCTATCATCACCAGTTAACCCATGAGAGCGCACAACTTCCAAGAATATTTGGGATGACTGCTT
CCCCTATAAAGTCTAAAGGTTGGTGGGATTGATCTTATAGCTTTGTACATCTTTTGAGATTTTT
CTACATCATAAATTACTGGTTTATCTCACTTTCTCTAATTCTCATGTTTATACTTTTGATGCAG
GTGCTAGCACGGCACATAGTTACTGGCAAAAGATCCATGACCTCGAAAATCTTATGAATTCCAA
GGTTCTCTCAATTAGTCTTCTTGTAGTTCAGAGAAAGAGCTCTGCATGCATTAAACTCTTAGCT
CTTGAATGATTGTCATATCGCTTTATATGCAGAAAGTCATAAACACACATTTAGATAGATATTC
CGTTCCTCTAATTGTTATCTCCCTTTGCAAATGAAGGTATACACGTGTAGCAGTGAATCTGTTC
TGGCAGAGTATATCCCATTCTCAAATCCGAAGTTGAAGATATATGAACATGAGGATATTCCTTG
CTCACTGTTTAATACTTTAGCTCATGACCTGGAAAGGTTGAAAGAAAAGGTGAACATCAATTCT
TTAGCCAATGGATTTTGTCTTTCTACTTTGCAGAATGTTCATCCTAACCTTTCATCCTGCTCTG
AAGATATCAATTATCATTTTAGCTTATTTTACCTCTCTACTTCTCTACATCGTGTGCAACCAGA
AAACAGAAAGTTTCTTGAAAGAATACCGAGACTACTAAATAAACCTTAATTTATCCTTATAGTA
GCGACTGGAGAAATCATGTTTTAACATATGGGTTAAACTTTTTTGCTCTTCCAGTTTTAGTTGT
TTAACTTCTCTTATCATTGCAGCATGAATGTTCGATTTCAAAGTCAAACCTGTCTGCTATGAGT
GCTGGATCTGCAAGAAGACGTTTATCGAAACTTCACATGGCTTTCTTATTTTGTTTGAGTGAGA
TGGGTGTGTGGCTGGCTTTCAAGGTAAACTTTTGTTCCTTGCTGGAGTAATAAACAGTGCCGGC
TCTATGCTATGAAAAACAAGGCCTTTGCCTCCCCAAATTTTTGTCAAGAATAAATTATTTTTTA
TAGAAAAAATTGTTTTTTTATGATAAAAGGTATAACTTTTTTTAAATATATTATTTTATCCTCT
TTAACATCTTTTGTACTTTGTAAAAATAAGAATGAATAGTGAAAGTGTTGAACAAAGTGAATTA
CAAATTCTTTTTTATTTCTTTTTAAATTTTAGTTTCAAGCATTACTAGAAACATATTAAAATGA
GGTATACTTTGTCATCAACTTCTTGAGTCAAATTCTATGGTTCTAACTCTTATCTTTATTTAAT
ATTTGTCAAGTTATACTTATAGCATTATGTGAATAATACATATAATAATTGCTTGAAATGATGT
TTTTTAATGTTGAGTTGATAAAATTTTACCTAAAACTAATATTAAATACTAGTAATTTCCATCT
AAATAGTGTAAGAATATAAATTTTGAATAAATACGCATATGAAGTTTATTTATATTTTAGGCCG
CGAAAATTAAAATTTCGCTTTAGGCCCCCAATTACGTTGAGCCGCCACTGGTAATAAATAAATA
AACGTTTTGTCCTTGATCAGTTTCCTAACATGACTTTGTTTTGAATCAGGCAGCTGAGTTCTTG
TCCTTTGAAGAAAATGATTTCTTTTCATGGGGAGAATTTGATGCATGTGCTCAGACAATTGTTA
GAGATTTCAGTTTGGGTGCATCTAAGATTTTTTCGGCCCGCTTACCTTCAGGTATCATAGTTAG
CAACATCCATGTTCTTTTATCCTTGAGCTGTAAGATTGTTTTTTGATTTCCTTCTGCAATCTGT
CTCTCTCTCACTCACTCTCTCTTCCCTGTAAACATAGGGCCACATTGGTCAATTGGTGGTGATA
TTCAGGCAAATGCGGATGCTGGATATTTGTCATCCAAAGTTAATTGTCTTCTAGAGTCTCTTCT
TGAGTACAGGTGAGAGCGCTTGAATGATGAATCTACTAATTAGTCAATAGCATTAATGTTAGTT
CAATCAATTGGGGTTTTGGATAATAGATAGAAAAAAGGAAAGTGGTCGGTTAGATTCTTTTAAA
TATTGAGCCCACTTTGGATTCATCAATAATTGTGAGCACTTTCCTTGGGGCTCAATTTGGACAG
TTTCTGAGATTATTTATTCTGTTGTTTGGAAATAGGATTCTATATTTTAGTGATTTACTTACAA
ACTTATCATTGGTAACAGGGACCAAAAGGATTTGAGATGCATTATATTTGTTGAGAGAATTGTT
ACAGCCATTGTTCTTCGGTCTCTACTGAATGAGTTGCTTCCGGAACGAAGTGGTTGGAGAACTG
AGTATACAGCAGGGCATGTTTCTGTGCTCCAGTCACAGAGTAGAAAAAGTCAAAATAAAATTGT
TGAAGAATTTCGCAAGGGGCTGGTAAGTCTATTTTTTTTTTATAATTAATTTTAGATAGTTTCT
GAAGATGTTAAGTCTGACATCCATGCAAAACACTGCAGGTGAACATTATTGTAGCGACATCTAT
TCTTGAAGAGGGCTTGGATGTTCAAAGTTGCAATCTTGTGATTCGATTTGATCCATCAGCTACT
GTTTGTAGCTTTATACAATCACGTGGACGAGCTCGAATGCAAAACTCCGACTTTCTTCTGATGG
TCAGAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.138412118
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016