Detail information of AT2G37540_circ_g.5


General Information
CircRNA Name AT2G37540_circ_g.5
ID in PlantcircBase ath_circ_017098
Alias AT2G37540_C1, AT2G37540_C1
Organism Arabidpsis thaliana
Position chr2: 15752935-15753847  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRI2
Parent gene AT2G37540
Parent gene annotation NAD(P)-binding Rossmann-fold superfamily protein
Parent gene strand -
Alternative splicing AT2G37540_circ_g.1 AT2G37540_circ_g.2 AT2G37540_circ_g.3 AT2G37540_circ_g.4 AT2G37540_circ_g.6 AT2G37540_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered AT2G37540.1:2
AT2G37540.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTCAGCAGTAGAAGCAGATCCAAACCCACTCTTTCCTTTTTTCCCTGTCATCACTCCATA
TATTCCCATGATCTCTCTCTCTCTCTCTCTCTTCCTatgagaatgttgagaggaacattaaggg
caagaaactgatcaacgaaggatctgactgatttgatggaagagacatcgatctggagatagtc
gacgcgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGAGAATGTTGAGAGGAACATTAAGGGCAAGAAACTGATCAACGAAGGATCTGACTGATTTGA
TGGAAGAGACATCGATCTGGAGATAGTCGACGCGAGCATTAGGGTTCATCTGAAGAATCATCTC
TTTAGACTCATTAGCAGCTTTTGGGTTTCTTGCGGCAATGATGACATGAGCTCCTCTCATTGCT
AACACTCTAGCTGCCTCCAATCCAATCCCACTTGTTCCACCTTTTTGTTTGTTCAAACAATAAT
TGTTCATAAAATTGCATATTGGTCAAAAATTATAGTACCAACTAAATACTACAAAACATATTAG
CTTTCAATTTTAATGAAAATAACTTTGGCAACAACATTCATATGCGAGTTTAATTTTGATCTAT
TAACTTAGTCTTAATTAGAGAGAAGATACATAACTAAGATATTTTGTTTATGGACAAAAAATCG
GTCATGACAAAACAGAAAGAAAATCTTTGGTGTTTGAAATACAAAAAAAAAAAAAAGTCCCCTT
TATATTATTTGCCTCACAAGTCACAATCGAAACTCTAGCTTAATCCTAAAAGTTTGACTTTTCA
TCCACCATTAAAACATTTCATCTTCCATTCATTGAATTTATAGTAGACTTGACTAATTTTATAG
TGTTTTCCGATTCTTTTTTTGGAAGAAAGTCTTACACGACGAGTAAACGTAAAATAAAATTTGT
TTGGCAATAGTAATAGATTGGGTTTGCAAGAAAATATCAGAAGGAAAAGGAAAAATGAAAGAAC
CTGTGATGATGGCAGTGAGATGACTGGCATCAATGGCTTGAGTAACATCTTCAGCAGTAGAAGC
AGATCCAAACCCACTCTTTCCTTTTTTCCCTGTCATCACTCCATATATTCCCATGATCTCTCTC
TCTCTCTCTCTCTTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.641552313
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhang et al., 2019