Plant Circular RNA Database

Detail information of Os05g0147500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0147500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_026563
					
						Alias
						Os05circ02698/Os_ciR825
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 2726980-2728049  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
					
						Parent gene
						
							Os05g0147500						
					
						Parent gene annotation
						
							Similar to DEGP2 (DEGP PROTEASE 2); serine-type peptidase/ tryps
in. (Os05t0147500-01);Serine endopeptidase DegP2 domain containi
ng protein. (Os05t0147500-02);Similar to DEGP2 (DEGP PROTEASE 2)
; serine-type peptidase/ trypsin. (Os05t0147500-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os05g0147500_circ_g.1 						
					
						Support reads
						58/29/12
					
						Tissues
						leaf and panicle/root/shoot, root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0147500-02:3
Os05t0147500-03:1
Os05t0147500-01:3

General Information
CircRNA Name	Os05g0147500_circ_g.2
ID in PlantcircBase	osa_circ_026563
Alias	Os05circ02698/Os_ciR825
Organism	Oryza sativa
Position	chr5: 2726980-2728049 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI, KNIFE, PcircRNA_finder, SMALT, Segemehl, circRNA_finder, find_circ
Parent gene	Os05g0147500
Parent gene annotation	Similar to DEGP2 (DEGP PROTEASE 2); serine-type peptidase/ tryps in. (Os05t0147500-01);Serine endopeptidase DegP2 domain containi ng protein. (Os05t0147500-02);Similar to DEGP2 (DEGP PROTEASE 2) ; serine-type peptidase/ trypsin. (Os05t0147500-03)
Parent gene strand	+
Alternative splicing	Os05g0147500_circ_g.1
Support reads	58/29/12
Tissues	leaf and panicle/root/shoot, root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0147500-02:3 Os05t0147500-03:1 Os05t0147500-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACAATAACAGTTTACTTATGCCATTGACGCAAACTAAGTTTGTTTTGCAACACAGGTCAAAGTA
AAGAGAAGGGGAGATGACAAAAAATATATTGCCAAGgtctattgcactcatattgcacctgatt
atgggcttccttggcagaagcaaaggcaacatgcaagcacagggaggcaagtattgatctaata
tgcatatc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 144
Transcript exons: 2726980-2727074,2728001-2728049
GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA
GCACAGGGAGGCAAGTATTGATCTAATATGCACAGGTCAAAGTAAAGAGAAGGGGAGATGACAA
AAAATATATTGCCAAG
Transcript length: 183
Transcript exons: 2726980-2727051,2727471-2727536,2728005-2728049
GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA
GCACAGGGAGTGCCTTTATGATTGGTGATGGCAAACTATTGACAAATGCACATTGTGTTGAGCA
TGACACCCAGGTCAAAGTAAAGAGAAGGGGAGATGACAAAAAATATATTGCCAAG
Transcript length: 216
Transcript exons: 2726980-2727144,2727999-2728049
GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA
GCACAGGGAGGCAAGTATTGATCTAATATGCATATCTGAATAAGTTTTTTGTTGGACTCTTTTG
TTTACTTTTGCCATACAGCACTGAGCCAGTGACTTCTACACAGGTCAAAGTAAAGAGAAGGGGA
GATGACAAAAAATATATTGCCAAG
						
					

						Genomic sequence
						
							GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA
GCACAGGGAGGCAAGTATTGATCTAATATGCATATCTGAATAAGTTTTTTGTTGGACTCTTTTG
TTTACTTTTGCCATACAGCACTGAGCCAGTGACTTCTGTCTGCCTTTGTGTTCCGTGAGTGGGT
GAGAAACAGTGGGCATAGATAATGAACTAATTATACTTCGATTAGTGGTTTTGTGATGTTGAAG
GGGAGTTTTACTGACCTTTTTTCTGCAGTTATGTTTTTCACTGATTGAACAACTCAGCTACTCC
AAAAATGAACTTGTAGATAAATGCTGTGTTTATTCTAAAATGTTTCTGTATCATCGTGACCTCT
GTGCTCAAATGCTCATATTTTAGATGGGGTTGTCTATTTCAACACAATATAATCAACAATTTAT
AAATCAGAACCCCTGAGCTTATCTTACTTGACATTTGTTTCACAGTGCCTTTATGATTGGTGAT
GGCAAACTATTGACAAATGCACATTGTGTTGAGCATGACACCCAGGTGCCTACTTATGTCTATC
AATTTCATTTTCCTATTTTGCAGTGGTATTTCAGATCCACATTCTGTATGTGCGTCCATACGAA
TCAACATTTTGCTTCATATTGTTAATTTTAGGCAGAATACAACTAGTGCTAACTTGTAAATCGT
GCAGACTCTGGAAACCAGGTTATCTTTGCTGGGAGTAATACTCACATAATCACATACTATGGAT
GTAAATAGAATCTTTAATACAAACTATCAAGGTTCCAAATAATACAGGAATTGCATCTTGTTAT
GCTTTGAAATTGCACAGTCCTAATTGAACCACCTGTTGATTTAATTTGGTTCAAGTTTTGAATC
ATTATTCACTAGATTACTCGATATCAGATGGAGTACCTCAAAATTTCTAGCAATATTTCTGTAC
CTCTGAATTTACAATAACAGTTTACTTATGCCATTGACGCAAACTAAGTTTGTTTTGCAACACA
GGTCAAAGTAAAGAGAAGGGGAGATGACAAAAAATATATTGCCAAG
						
					

			
		

Sequences
Splice junction sequence	ACAATAACAGTTTACTTATGCCATTGACGCAAACTAAGTTTGTTTTGCAACACAGGTCAAAGTA AAGAGAAGGGGAGATGACAAAAAATATATTGCCAAGgtctattgcactcatattgcacctgatt atgggcttccttggcagaagcaaaggcaacatgcaagcacagggaggcaagtattgatctaata tgcatatc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 144 Transcript exons: 2726980-2727074,2728001-2728049 GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA GCACAGGGAGGCAAGTATTGATCTAATATGCACAGGTCAAAGTAAAGAGAAGGGGAGATGACAA AAAATATATTGCCAAG Transcript length: 183 Transcript exons: 2726980-2727051,2727471-2727536,2728005-2728049 GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA GCACAGGGAGTGCCTTTATGATTGGTGATGGCAAACTATTGACAAATGCACATTGTGTTGAGCA TGACACCCAGGTCAAAGTAAAGAGAAGGGGAGATGACAAAAAATATATTGCCAAG Transcript length: 216 Transcript exons: 2726980-2727144,2727999-2728049 GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA GCACAGGGAGGCAAGTATTGATCTAATATGCATATCTGAATAAGTTTTTTGTTGGACTCTTTTG TTTACTTTTGCCATACAGCACTGAGCCAGTGACTTCTACACAGGTCAAAGTAAAGAGAAGGGGA GATGACAAAAAATATATTGCCAAG
Genomic sequence	GTCTATTGCACTCATATTGCACCTGATTATGGGCTTCCTTGGCAGAAGCAAAGGCAACATGCAA GCACAGGGAGGCAAGTATTGATCTAATATGCATATCTGAATAAGTTTTTTGTTGGACTCTTTTG TTTACTTTTGCCATACAGCACTGAGCCAGTGACTTCTGTCTGCCTTTGTGTTCCGTGAGTGGGT GAGAAACAGTGGGCATAGATAATGAACTAATTATACTTCGATTAGTGGTTTTGTGATGTTGAAG GGGAGTTTTACTGACCTTTTTTCTGCAGTTATGTTTTTCACTGATTGAACAACTCAGCTACTCC AAAAATGAACTTGTAGATAAATGCTGTGTTTATTCTAAAATGTTTCTGTATCATCGTGACCTCT GTGCTCAAATGCTCATATTTTAGATGGGGTTGTCTATTTCAACACAATATAATCAACAATTTAT AAATCAGAACCCCTGAGCTTATCTTACTTGACATTTGTTTCACAGTGCCTTTATGATTGGTGAT GGCAAACTATTGACAAATGCACATTGTGTTGAGCATGACACCCAGGTGCCTACTTATGTCTATC AATTTCATTTTCCTATTTTGCAGTGGTATTTCAGATCCACATTCTGTATGTGCGTCCATACGAA TCAACATTTTGCTTCATATTGTTAATTTTAGGCAGAATACAACTAGTGCTAACTTGTAAATCGT GCAGACTCTGGAAACCAGGTTATCTTTGCTGGGAGTAATACTCACATAATCACATACTATGGAT GTAAATAGAATCTTTAATACAAACTATCAAGGTTCCAAATAATACAGGAATTGCATCTTGTTAT GCTTTGAAATTGCACAGTCCTAATTGAACCACCTGTTGATTTAATTTGGTTCAAGTTTTGAATC ATTATTCACTAGATTACTCGATATCAGATGGAGTACCTCAAAATTTCTAGCAATATTTCTGTAC CTCTGAATTTACAATAACAGTTTACTTATGCCATTGACGCAAACTAAGTTTGTTTTGCAACACA GGTCAAAGTAAAGAGAAGGGGAGATGACAAAAAATATATTGCCAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005961* osi_circ_015791 						
					
						PMCS
						0.456591466

Conservation Information
Conserved circRNAs	osi_circ_005961* osi_circ_015791
PMCS	0.456591466

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							2727481-2728046(+)
2728028-2727480(+)
2727041-2727500(-)
						
						Potential amino acid sequence
						
							MIGDGKLLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIG
DGKLLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIGDGK
LLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIGDGKLLT
NAHCVEHDTQVKVKRRGDDKKYIAK(+)
MTKNILPRSIALILHLIMGFLGRSKGNMQAQGVPL*(+)
MLPLLLPRKPIIRCNMSAIDLGNIFFVISPSLYFDLGVMLNTMCICQ*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to Pi-starvation

Functional Information
Coding potential	Y
Potential coding position	2727481-2728046(+) 2728028-2727480(+) 2727041-2727500(-)
Potential amino acid sequence	MIGDGKLLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIG DGKLLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIGDGK LLTNAHCVEHDTQVKVKRRGDDKKYIAKVYCTHIAPDYGLPWQKQRQHASTGSAFMIGDGKLLT NAHCVEHDTQVKVKRRGDDKKYIAK(+) MTKNILPRSIALILHLIMGFLGRSKGNMQAQGVPL(+) MLPLLLPRKPIIRCNMSAIDLGNIFFVISPSLYFDLGVMLNTMCICQ(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to Pi-starvation

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0147500_circ_g.2

Address

Any questions?

Supported by