Detail information of Zm00001d047494_circ_g.1


General Information
CircRNA Name Zm00001d047494_circ_g.1
ID in PlantcircBase zma_circ_003010
Alias circ1408
Organism Zea mays
Position chr9: 132495382-132499488  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method CIRI
Parent gene Zm00001d047494
Parent gene annotation AAA-type ATPase family protein
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered Zm00001d047494_T025:10
Zm00001d047494_T034:10
Zm00001d047494_T015:10
Zm00001d047494_T006:10
Zm00001d047494_T053:10
Zm00001d047494_T017:10
Zm00001d047494_T003:9
Zm00001d047494_T045:10
Zm00001d047494_T023:10
Zm00001d047494_T047:10
Zm00001d047494_T042:10
Zm00001d047494_T052:10
Zm00001d047494_T004:10
Zm00001d047494_T031:10
Zm00001d047494_T005:10
Zm00001d047494_T002:10
Zm00001d047494_T060:4
Zm00001d047494_T007:10
Zm00001d047494_T030:7
Zm00001d047494_T048:10
Zm00001d047494_T057:10
Zm00001d047494_T021:10
Zm00001d047494_T012:11
Zm00001d047494_T032:10
Zm00001d047494_T055:10
Zm00001d047494_T038:10
Zm00001d047494_T036:10
Zm00001d047494_T020:10
Zm00001d047494_T028:10
Zm00001d047494_T059:10
Zm00001d047494_T026:10
Zm00001d047494_T050:4
Zm00001d047494_T013:10
Zm00001d047494_T043:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACCTAATAAAGTTTTATTTCTACGTGCAGGCAAATGTTAGTTCTCCTTTTCTTTCGAAGTTC
CGGTACAGCCAAGCTATACTTGGCCTCACATTACAGgatatttgagcaacttcatgaggagaaa
tcaagcacttcagtgttatcttccacttgcacttgcagtagtatccagctggggcaacactcac
atttcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATATTTGAGCAACTTCATGAGGAGAAATCAAGCACTTCAGTGTTATCTTCCACTTGCACTTGC
AGTAGTATCCAGCTGGGGCAACACTCACATTTCAATGATATTCAGGATCATGTGTCATCTAAAG
GGCGCAAAGCCTCATCCTTTCTCTTTGGAAGAGGTCGGTGTTCATTGTTGTCTTGTGGTGAGAC
TTCATATTTGTCATCGTTGTTTCTTTGTAAACTATTGCTTCTTAGTTCCAGAGTTCTGAATTCA
CAGCTGTTTATATGATAGTACGGACATAACGTCTCCCCCCAAATATTCTTCAGTGCTTGATGCA
CAATATTTTTTGTTCGCAATTGGTTTACCATTTATTATGTACACACTGTTGCAGGTCTATCAGC
AGACCCACTTAATATATGTAAAACGACGGAGGGCCGGAGCCAGTTTATCTCTGAAGATAATATA
TCATCTGGTCGGTGTCAGCTACTAAAGGAGGATTTGATTAATGCAACGGTTGATGTGAGTGACA
TCTCTGAGTCATTTGATAGTTGCCCATATTATCTAAGGTACACGTACATTCTGCTGTCTCATTA
GATTATGTTATTTGTGATTTACTGAAACTTGTTTGGCCAGGAGACATGATACTATTTCTTCCAC
ATAGGTGCATTAAGTTGAACCATGTGTCATCTATACACCATAATTTAAGCTCTTGACACAATGC
TTGCTCATTCAGCACTCATGTTTTAATCTTGCATACATTTGTATGTCTGTACCTCAAGATTGCA
TGATCTATAAGATTTCTAAAAAAGTCTAATGATAATCTGTTTGGGACTATGAAATGCAGTGAGT
AGATAGTAGTTTTTTTTGCTTTTCTCTTCAGGATATTGATCATTTGTTATTGGCTGTTGAACAA
ATATCTTACACAACTCATGGTTGGAGTCAATTTTACACAATTGGCTTTCCCTATCCTGTATTCC
AATTCTTGAAACATTTTGTAAACTATTATTTCATTGTGCACAGAGCTTATTTGAATTCCTCTAG
TCTTCAGAAAAATGCAAGTGTAATGCTCAAAATAATAGTTGTACTAAACAACATTCTGATACTG
CTTAATTGCTTATCATTTAATCATTGCAGTAGACAAGTAGTCGTTTACTGTCTTTGGCCTGATT
TACTTTGTTATTTAGGATTTAAGATGTAGACGAAGTCTTCTAGCACCTGCTAAATTACATATGA
TTGAAAATTGTCAAAATCACAGCAATGTCGAATTATTTTTATGATAAATCTATGATATTGTCCT
TATGCTAGAAATCTAAATACTTTGGTATATGGTCGAAATTTTTAAACTTTACTGCTCACATTCT
AGGACTGTTTTCCAGTATTTAAGTTCGATTGATGAATCTGCGCTTGTTAATAATTGTTTTCTAT
TATTATCCCTACAGTGAGCATACCAAACATGCTCTAATGTCAGCAGCATTTGTACATTTACATT
GCAAGAACTACTTCAAGTTTACAAAAGATATATCTTCTCTTAGTCAACGAGTGCTGCTATCTGG
CCCAACAGGTATACATGTGTAAACCTGTACTTTATTTAGCTTTATTTGAAACTCGCAATAATTG
TTTCTGTTTTTTTATTAAGCGGTGGTAATTTATCTTTTCCAGGAACTGATATGTATCAAGAATA
TCTGGTGAAGGCCCTTGCAAAGTATTTTGGTGCTAGATTGCTCACTATAGATTCTTCCATGCTG
TTTGGTGTAAGATCATGAGCTATTATGTTTATTCTTCTTCGTTCTAATTGTGACAATCATAACT
ACGATGTTTCCAAATCTATGGCTTAACATCATGAGTTCGTGACATGACTGTACTCTCTTTATCT
TATCATTCTGTACCTGCTTTTCATCTTATTATTCTATCTATACTGATGGTCTTGTCATCTTACT
CTGTACTATGTTGGAAAAGAAAAAACCCTGCTTTGACTGTGCACTTTATGAGTTCTCTGTTTAT
TTGCTGGTACTTGGTACTCATTTATATTTTGTTGTTCAGGGGCAAACTTCCAAGGAATCAGAAT
CATACAAAAAGGGTATGAATGTGGAAACTATGTGATTTTCATGTTTAGTTGAATTTTAGTTCAG
AATTTTGGTCATCTTCTTTTCCGTTTTAATGCATTCCTAGTGGGCTTGCATTTATCCACAACAC
TGACCATTACCAGGGGCAAATGTAGGAAAGAGCAGATCAAACTCATTCATGTGTTTGCCCACAA
ACTAGCCTAGCAGGGCGCATGGATAAGGTTCTAATATTCTGTAATGTTGTCTAAATAAATTGTT
TTATTGTTATTATCTATTCAGGTGATAGAGTGAGGTATATTGGCTCAGGCATTATCCTTGATGG
ACAGAGGTACAACTTGCATTTTAGACTGAATTTAATAAGTCATCTTTTTTAATGATATTGCCTG
AATTTAAATTTTATTGTCAAGCAAAAGAAAAACGTTTGGCATTTTATCCGATTTAAGCCTTGTT
TGGCACAGTTTTTTTCCTAGCAGCGTGGAGAAGCCGTTTTTAGAAAGTTGCTGCACAAAAAAAC
TAGGTTTTGGGGCTTCCACCTTTGTGCAATAGTTCTTTGTAAGTGGGCTCGTCTTGTCATCCCA
TCCATTCAGATTCCAGACCCATCTTCTACAACCACAAATCCCTGCAAGCTACTGTGCTTGCAGG
GATATTTGACTCGTAGAGCCGGGCCTTGCGGAATGCAGCTTGGTGATTGGGGGAATCTTGGCGG
GGCTCAACCGGCAGGGGGCTGGCCAGCTGGTGGCGAGGGAGTGGATGCCAATGGTGGTGTGCAA
CATGTGAGGAGGAGAGGCTTAGTGCGAAGGGACACATCTCCCTCGAGCATTGGAGCTCATTTTC
TCTGGTGGTAGCCTAACAGTGAAGTGGGAGAGGAGGGAGAAGTGAGCTGGACAGATGAAGGAAA
AGGCAACAGGAGGGTAGCACTTGTGGGCGAAGGGGAAAAGCCTTGTGAAGTTGTGTGTTGGGGG
TGGGTGGGTGGGGTGGCTAGCTTCTCAGCTTAATCTGGTTTCACAATAAAACGAGAGAAGCGCT
GGTTCTGAATGTGCTCGAGGAGTGTGGTGTTTGGGATGTCTTGCGGCTTTAAAAAAAGTAAAAG
CTCAGAAGCCGGGCAGCCAAGCGGCCGAATAGAGCTGTAGTAGTCCGACCTATGACTTGTGTTT
GTCTTGTTGGCAAAGATATGTGTTATTTTGTTACTGAAATCAAATAGAGATTGTTGTTCATCTT
ACAACTATGTTGATGTATTAATATCTGCTTTTGTTAAATTGTTCAACCTGCAGCCCTCCAGATT
TTGGTTCACAGGGTGAAATATTTCTTCCTTTTGAAGAAAACAGATCATCAAAGGTTGGTGTAAG
GTTTGATAAAAAAATTCTGGGAGGAAACAATCTTGGAGGCAATTGTGAAGTTGATCATGGTTTG
TTCTGTTCTGGTTAGTACATTCTGATGTCTAGCAAGTTCTCATGAAAACAAATTACATGATGCT
ACTTATGATGCACTGCGCTCAATTATTTCATGGCGATGGTCACACTTCAATTGTTTGGGTAATG
TTCCTACCTGTTGCTGTTTCAGTTGATTCTTTATGCCCCGACATTCCAGGATGGGAGGTTACGT
TCAAACATCCATTTGATGTGATAGTTGAGGTAATTAACAGTTGTATTTTATTTTTTCTAGGATT
TGGAAATATGCTATTTTGCTTTCCTTACACTTACTGTGCTGTGCTATACAGTTTATCTCTGAAG
AAATTCGGCATGGCCCTTTAATCCTTTTTCTGAAGGACACAGAGAAAATTTGTGGGAATAATGA
TTCCTATCATGGTCTGAAGAGCAAGCTAAAACATTTTCCAGCTGGCGCTTTTATAATTGGATCT
CAAATCCAGCCTGACAATCGCAAAGAGAAGGTACCGTTTTGCAAATTAGATGACACTAGACTAA
AGATGTTCCATACAATATTGTCTTGTTTACTTATCACTTTTACCTAATAAAGTTTTATTTCTAC
GTGCAGGCAAATGTTAGTTCTCCTTTTCTTTCGAAGTTCCGGTACAGCCAAGCTATACTTGGCC
TCACATTACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.075123241
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b