Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d047494_circ_g.1 |
| ID in PlantcircBase | zma_circ_003010 |
| Alias | circ1408 |
| Organism | Zea mays |
| Position | chr9: 132495382-132499488 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | CIRI |
| Parent gene | Zm00001d047494 |
| Parent gene annotation |
AAA-type ATPase family protein |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | seedling leaves |
| Exon boundary | No-Yes |
| Splicing signals | GT-TA |
| Number of exons covered | Zm00001d047494_T025:10 Zm00001d047494_T034:10 Zm00001d047494_T015:10 Zm00001d047494_T006:10 Zm00001d047494_T053:10 Zm00001d047494_T017:10 Zm00001d047494_T003:9 Zm00001d047494_T045:10 Zm00001d047494_T023:10 Zm00001d047494_T047:10 Zm00001d047494_T042:10 Zm00001d047494_T052:10 Zm00001d047494_T004:10 Zm00001d047494_T031:10 Zm00001d047494_T005:10 Zm00001d047494_T002:10 Zm00001d047494_T060:4 Zm00001d047494_T007:10 Zm00001d047494_T030:7 Zm00001d047494_T048:10 Zm00001d047494_T057:10 Zm00001d047494_T021:10 Zm00001d047494_T012:11 Zm00001d047494_T032:10 Zm00001d047494_T055:10 Zm00001d047494_T038:10 Zm00001d047494_T036:10 Zm00001d047494_T020:10 Zm00001d047494_T028:10 Zm00001d047494_T059:10 Zm00001d047494_T026:10 Zm00001d047494_T050:4 Zm00001d047494_T013:10 Zm00001d047494_T043:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.075123241 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chen et al., 2017b |