Detail information of Os06g0677800_circ_g.1


General Information
CircRNA Name Os06g0677800_circ_g.1
ID in PlantcircBase osa_circ_032003
Alias Os06circ16618
Organism Oryza sativa
Position chr6: 28159770-28160212  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0677800
Parent gene annotation Similar to P-167-1_1 (Fragment). (Os06t0677800-01)
Parent gene strand -
Alternative splicing Os06g0677800_circ_g.2
Support reads 2
Tissues panicle
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0677800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGATAGCTCTGTGGCTGGGAGAATGGTAATACTGTTTGCAGTGTCATAGGTGAAGACTGAGAAG
GAGAGGAGAGTTGAGAAAACGGTGACAATGCATTAGaagtgactgtgaatctatgttaacgcca
aataacagatggttttgaggatcagagttcccatcttgatccaccaagcatcctcttccaggaa
gcggcgcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGTGACTGTGAATCTATGTTAACGCCAAATAACAGATGGTTTTGAGGATCAGAGTTCCCATCT
TGATCCACCAAGCATCCTCTTCCAGGAAGCGGCGCCAACGCAGAGCTTTGTGGTATACTAGGTG
CTGTTGAGTCCAACTGCTCCATCTGCGATGTAACCTGAGGACGAGAGGGAAGCAAAGACTCCAC
TGCAACTCGCTTCGATGACCATGGGTCAGGGACAGGTACTGCAGTCGGTCTTGGCATGCTTAGG
TGCGAAGGTGCTTCCGATGAAAATGGCCTCAATGCATTATGCATGGTGGATGTGTTGGATGGTG
ACAATGAGCTCATACTCGTGTCTGGATAGCTCTGTGGCTGGGAGAATGGTAATACTGTTTGCAG
TGTCATAGGTGAAGACTGAGAAGGAGAGGAGAGTTGAGAAAACGGTGACAATGCATTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.50471076
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015