Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022148_circ_g.3 |
ID in PlantcircBase | zma_circ_009471 |
Alias | zma_circ_0002648 |
Organism | Zea mays |
Position | chr7: 171255170-171256294 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d022148 |
Parent gene annotation |
fowlpox viral protein homolog1 |
Parent gene strand | + |
Alternative splicing | Zm00001d022148_circ_g.1 Zm00001d022148_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d022148_T001:2 Zm00001d022148_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.346772956 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
171256237-171255170(+) 171256244-171255189(+) 171255209-171255184(+) 171255211-171256193(-) 171255345-171256267(-) |
Potential amino acid sequence |
MDHGLLPLQFYLLAWDGECR*(+) MVCSLCNFICWPGMGSAGSPLFLV*(+) MGTPNEMMAYSSLSKMDTSQNHGAALSNVVAGNNYPVQDYLYEQASEPDFPEYDSRDDLFAPTR ASPKVNLNTVLGGLVSIVTGVNKSEDDASQHESFSTDISFLRSDKNGNVNVHPSVCVPSAPPLL EANALQYSAYKEVLLADPPEWLPDSSANVCLQCNLPFTALTRGRHHCRFCGGIFCKNCSKGRCL MPMKFRIRDPQRVCDACYERLDPLQGLLINYNSNCMQQAKHDVMDWTSTRSWLNMPVGVSMEYE IYKATNTMKKYCQVARLNPEKSIPSSILKGAKGLAILTVAKAGAVLTYKVGTGLVVARRSDGSW SAPSAILSVGLGWGVQVVPCS*(+) MESFRGYTRNKGLPALPIPGQQIKLQREQTMIHQICEQPQDQCQLCM*(-) MLAHKDNPEQDSCFQQLHWTEQLRGSGWCPFWTGKSMPSFRLEFPWNHLEVILGTRDYLHSPSQ ANR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |