Detail information of scaffold248_circ_ig.1


General Information
CircRNA Name scaffold248_circ_ig.1
ID in PlantcircBase ecr_circ_000389
Alias NA
Organism Echinochloa crus-galli
Position chrscaffold248: 61047-61488  JBrowse»
Reference genome Echinochloa crus-galli v2
Type   ig-circRNA
Identification method circseq-cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing scaffold248_circ_ig.2
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   AC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCAT
CAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACcggggaaacttaccaggtccagacatag
caaggattgacagactgagagctctttcttgattctatgggtggtggtgcatggccgttcttag
ttggtgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGGGGAAACTTACCAGGTCCAGACATAGCAAGGATTGACAGACTGAGAGCTCTTTCTTGATTCT
ATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACG
AACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGG
GACTATGGCCGTTTAGGCCACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTT
CTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTATATAGCCTTGGCCGACAGGCCCGG
GTAATCTTGGGAAATTTCATCGTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGA
ATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTACAC
Conservation Information
Conserved circRNAs "ath_circ_016790 ath_circ_007925"
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References NA