Detail information of BGIOSGA016616_circ_ag.1


General Information
CircRNA Name BGIOSGA016616_circ_ag.1
ID in PlantcircBase osi_circ_005561
Alias 4:22459026|22462436
Organism Oryza sativa ssp. indica
Position chr4: 22459026-22462436  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGTGGTCGCTGGAGCGCTTTGGCATGCGGGAGTCCGTCGCCGGCGTCCGGGTCAACAACCCC
GGACTCCTTGACCTGCCCCTCATCGATGTGTTCCAGgaagtggtgtcagctttggccaagaaca
atattatggttatacttgataaccaaatgacaactccaggatggtgctgcagcgaaaacgacgg
taatggct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGTGGTGTCAGCTTTGGCCAAGAACAATATTATGGTTATACTTGATAACCAAATGACAACTC
CAGGATGGTGCTGCAGCGAAAACGACGGTAATGGCTTTTTTGGTGACAAGTACTTTGGCCCAGA
AGAATGGTTGAAAGGCCTTAGTGCAATGGCAACAATGTTTAGGAACACAAAAAATGTTGTGGGC
ATGAGTTTAAGAAACGAGCTCCGAGGCTCCAAAAATGTTAGTTTGTGGTTCAGGTTTGTTACTT
ACACACTGAGTCTTACTTTTGTTTATAGAAGTATTGAAAAGCCTTTTATGTGTGACTCGTGTCA
TTGGAAAAATTTTCGTTTATAATCTATTCCAAACTTAGGTACATGCAACTGGGTGCTGAAGTTG
TGCATGCGGCAAACCCTGGCGTTCTTGTTATTTTGTCAGGCCTGAACTTCGACAATACTCTGGA
TTTCTTGGTCCCAAATCAAATTCAGCTAACATTTACTGGAAAGTTAGTCTTTGAGCAGCACTGG
TATGGTTTCTCAGATGATGGCAACTGGGGATCTCGGAACCAAAACGATGCTTGTGGGATGGTTG
TTGATTTCATAAAGAAAAAAGGACTGTTCATACTTCAGCAAGGCTGGCCACTGTTTTTCTCCGA
GTTTGGGTTTGACATGTCTGGGACACATGTCGCTGACAATCGCTATCTTACCTGCTTCTTAACC
GTGGCAGCTGAAATGGATCTGGACTGGGCTATTTGGGCTCTACAAGGGAGTTATTATATCAGGG
AGGGTACTCTAGCTTATGATGAATCTTATGGATTGCTATCCTGGGATTGGTGTACAGCTAGAAA
CCCCAGCTTTATTAAAAGGATTAATGCTCTGCAATCACCATTCCAAGGTTTGTACTTAACCTAT
CTCAGTTTTATTCTTACATAGCAACGTTGTTAGTAATACAACTCTCAAGATTTCTGGAACTGTG
CTGTTGTTCTACGTTTTGATAATCACATTAAAAATGGAGCTCTCTGGTAAAATTGAAGTTATAA
TGGACCCTCAGTTGCTGAACCAACAGAAAAAACCTGTGCATATTTCATTGGTTGAATTGGACCG
CTTTTCAATTTTTCACCTTTTTGGGTTGTGTTGGAACAGATTTATTGGAACATATATGAAATCG
GAGCATTTACTAGTATGCATACATTGGTTTAGCCCTCATCATAGAATAACATGTCCCTTAAAAA
GAAATCACTTGGATGGATACACAGGCAGATGTGCAAGAAAGTAGGCAAAGGGGCTATGTAACTT
GTAAAAAGTCCACTAAAAGTTTGGTCACAACAATATGCACTGTATTTCCTTGAGCTATACATGT
TAATGAATATTCCATCCTCCAGGTCCCGGGCTTCCAAACAGTCATCAGCCTTACAATGTTATAT
TCCATCCTCTATCTGGGCTTTGTGTCTTGGTGAAATCTTCAGAGGCACTTGAGTTGGGTCCATG
TGATAAATCAAATGCTTGGAATTATACCAAAGGATACGAGTTAATACTCAAACAAACTGGACAA
TGCCTCCAGGCGAAGTCTGTTGGTGAGAATGCAAAGCTTGGCACCAGTTGCAGCAAATCCAGTT
CAAAGTGGAAGCTACTATCAAATTCAGGAATGCATGTTTCAACTGAACTCACCAATAACGGAAC
CAGAGTATGCTTGGATGCCAGTCCTGATGGAAATATCACGACAAATCAGTGCAAGTGCCTAACC
GTAGATCCGGATTGCAATCCTGAGAGTCAGTGGTTCAAAATTATATTAAGCAGTAAACACATAC
CAGGCGGCACCTCCATTTTGCAGTTGCCATCTCATGGTCCCTGGTCTCCAACATCATCTAGTTA
ATCTTGGCACTATTTCGAAGATATCCTGTTTGAATTTGATCAAGGACGAATATGACAGAGCAAG
TGTCAAGTTCCAGATGGTTATTCAAGGCAATTGGATGACTATAGTATTGTAACTTGTAAAATAA
TACACAGAACACCGTATGTGTACAGTAGTAGTACCATTGATTTCTTGTTTTCTAGAGTCCTGTT
GAAATATGTCCTATCATATGTGTACAAAAATTAAGAATAAAAGAATGTACAGAAAAATACCCTG
CTTGTTCTTTGATACTACAGAGAATAAAAGGGATATCTTTTTATAGTTGGTGTCATATGTTGAC
ATGGGTGAAAACATTTTTTAGCCGGATTGGCCGAAGACATGGCCAACCAATTATATCAAGATTT
AGAGAGAAAAGTTGCAAATTACAAATTGATGTTGACAGTAGGCTGTAGTCGAGGGCGGGGCTAA
AGGAAACAAGCCGGCGCATCTTAGAACACAACTATTGTTAGCGTGCCGGTAAACAGCAAACACC
AACTACTGTTCTTGCATCTTGAACAAACCCCTGCTTCGCGCCACACCATGATTTTTGATTTCTC
CTTCACTTCCGCGAACAGACATCAACTCTGCATTGCTTGTCACTGCATCCGCACTTGGCGAAGC
CCATGCGAATATGCGATGATGGTGCAAGTCCGCCCGCACATACAGCCAGAGAAACGCATCCGGT
GTCGAGCATTTCCACGAACAGGTGGTGGGTGCCCCCCGCACGCGCACGGAGTAAGGACGTTGTG
CGTTCTGCTCGGAGAGAGGCGAACAGCCAGGGGCCCGAGGCGGAGAAGACGGAGCGCGTAGGCA
AGGCGGGAAGGAGGAAGGGGAGGCAGCCACGCCGCACGAGGTATGAAAGGCGACGGCGGCGGCG
GCGCCGTCGCAGGCGTGGCGGTGGCGAGGAGAGGCGGCCATCGGAGTGCGCGCTTCCGCAGTTA
AAGCCCCCAACCGCTTAACCGAACGAGCCCGGGCTGTCACGTTTCGCTAATTATCCAAGCGGAC
GAAGACCATACGTGACACTGCAACCGGGGCCCACCGTCGTCCGGGCCCACCTGTCATTCACACG
TCTTTTTTCCTTTTAAACGCACTAGATCCGCCTCGTTGGCATTCTGCCACGCCATAGTTACCAT
GGCTTCCTCCGCTTGTCCCACTCCACTTCTCCTGCTGCTGCTCCCGCTCGCCGCCGCCGCCGCC
TCGCTCCCGCCGCTGCCGCTCTCGACGGCGTCGCGGTGGGTGGTGGGCGCGGACGGGCGGCGCG
TGAAGCTGGCGTGCGCGAACTGGGCGTCGCACCTGGAGCCCGTGGCGGCGGAGGGCCTGTCGCG
CCGCGGCGTGGGGGACATCGCGGCGCGCGTGGCGGCGATGGGGTTCAACTGCGTCAGGCTCACC
TGCCCGACCTACCTCGCCACCAACGCCACGCTGGCGAGCCTGCCGCTGCGGTGGTCGCTGGAGC
GCTTTGGCATGCGGGAGTCCGTCGCCGGCGTCCGGGTCAACAACCCCGGACTCCTTGACCTGCC
CCTCATCGATGTGTTCCAG
Conservation Information
Conserved circRNAs osa_circ_024230*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021