Detail information of BGIOSGA032075_circ_igg.2


General Information
CircRNA Name BGIOSGA032075_circ_igg.2
ID in PlantcircBase osi_circ_008881
Alias Chr10:12829457_12831769(MH63RS2), Chr10:12829457_12831769(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9388844-9391155  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA032075_circ_igg.1 BGIOSGA032075_circ_igg.3 BGIOSGA032075_circ_igg.4 BGIOSGA032075_circ_igg.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCAGATGGTTTATTCTTAAGACGACAATTTGACATATCAGGCATGCTGTGGGCTGGATTATC
ATCATTGATCGTACCAGATTTACATATGCATTCCCGccttcccagacatcatgtcaactgatat
aatgtgctttacagtttcctgggagaaaataacaggtgcatactcatcttgaactggtgaaggc
tgaagctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCCCAGACATCATGTCAACTGATATAATGTGCTTTACAGTTTCCTGGGAGAAAATAACAGG
TGCATACTCATCTTGAACTGGTGAAGGCTGAAGCTTTTCAGGATTGTAGTCATGAACAAGGGAT
TGATCTTCGGTCTCCATTTTCTTAATCTTCCATCCAAGCTTTTGCTCAAACAACTCCCTTTCGC
TGTGCAGCACCTTCAAAGCATAGGCAACACCACTCATCAATGGCCTTTCAAATGTTGTCCTAGC
CGTGAAATCCTCAAATGTTTTCTGTCAAATGTCAATGATAACAAGATCTCATAATCTTGAAAAA
AAGCACAGTATTAATAGGATAGAAAATAACAAGATGTTTTCTTTTAAATAACATAAATCTTTGA
AAAACTGTGCATCCCCTCCTGGCCTCCTGTTTCAGCTATAATGATGTTTTTTTCCCAGTGACTT
ATCATGGTATAAGCAGTTTTGAATGGAGACACCTATTCTAAACATTTTTCTTTGGACAAACAAA
TTGCTAATGGCTAATCAGATTTTATACTCCTTCCAGTCAGTCACAAAAACATACCATTTTGATC
ACACGGCCTTCAAAATACAACTTTCACAGCTAATTTCTTTTACAATGCATTTTTAGAAACCTGA
TTAAATTATTAAATTATCAAAACATTTTTAATAATATTAAAAGTTTGTTGAATCACCCTTGCAA
TTAAGAAAGATGTATCCAAAGAAAGCAAACCTGATCAATAGCAGAAGGATTCTTCCCATGGTGA
AAAGTTGAGACTAAAATAGCCAATGCATGCACATGGTTCATGCTTACATTGAACTGATCTTGTA
GCATCCTAGCTCTCTCATCACACATATTTTCAAGATTCTCAATTCTTCTAGCAACAACATCAGC
ATGCATGCTTGAAAATATCCAGACAGAACTACAAAGCCCAACTAAGACACCAAGAAGCAGGGCT
CTCTTTGACCATTTTCGACTTTTCTTAACACTCGGTGTCTGGAGGAGTTTCTCATGCTGACACA
GTTCATTTGCTTGCTTCCCTCTTTTGAAAATAGTTATAACTACCAAAATTACAACTATTCCAAG
GGAAGCAGACAAACTAAATATCATCCCGTGATTGCAGCTCAAGGCGTTATTCTGCTGTACATTC
AGCCCATTAATGACAATATACAAGTCACATAGGCATAGCTAAATATATTGAAAACAAAAAGGTA
CGATCAATAGGAATCTGTAATGGTTAAAGATCAACATGCTATGAATCATGACATTGTAAGTCAA
GAAAATAGATAATCACAATACAAACCAAAAATGGCATTAGAAACATGGAGAAGGTGCTTCTCTT
TAATAAATGAAATGTCAAAAACAGTTGCAGAAAAAAAAAAGGATAATTAACTCTGATTAGGCAA
TACAAAACTGTGAAATTAATAGCATTATTTGATACAAGAAGATTCCGTAGGAAGTTATTTCTTA
AGAGATGTAAATATAGTTTTTTTTTTCTACTTTAGCCTCATTTAAGCTCAATTTAACATGTTCT
GCAAAGGAATCAACACACCTGAGTTATTGGCATTTGACAATTGGCAGGGCAAAAGGACAGCTCT
GTAATTTCTTCAAGAAAAAGCTCGACTTAAGCATGACTTTGAGTTATTGGAATCAAGTTGGACG
TATAATAGTATGGCTAGCAAGTCCTACAGTACTATGTGGCAGTAAGACTGACGAGACCTATTGT
TGTTCTAGTTAAGATAGCTCGGTGGCTACATACTAATTGGACAATGCCAAGATAGATGCCGATC
CCCATTACATCAAAGTAGCAGAAAATAAATCCAACCTAACATATAGATATGCCAATATCATGCA
ATCCTCTGAAGTATTTAGAGTCAAGTAGACAATCTGGTTAGTAGGTCACAAGAGTTGAAGGTTC
AGATCATTCATGAATCAGCCACATTAACAATATGTTATAATACAGTCCAATTCCATTAATGCTC
TATATTCCAAGTTTACAGTGCAAAAAGAAATGTAGCTAATTTGACACTTCACCAAGTTCATCCA
GGATAAAGAGAAACATAAAACACTCACATTCCACAATGTCGTAGGAGAGCATGTCTTGTTGCAT
GGCATTTGCAATAAAGTGTTTTCATGATTATTTTTGTCATAATTATCTTCATTTGCGCAACAAT
CTTGAATAATCACATTGTCCAGCCTGTTTTGATTTCCTCCAGATGGTTTATTCTTAAGACGACA
ATTTGACATATCAGGCATGCTGTGGGCTGGATTATCATCATTGATCGTACCAGATTTACATATG
CATTCCCG
Conservation Information
Conserved circRNAs osa_circ_006592
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021