Detail information of AT2G11000_circ_g.6


General Information
CircRNA Name AT2G11000_circ_g.6
ID in PlantcircBase ath_circ_013156
Alias NA
Organism Arabidpsis thaliana
Position chr2: 4347493-4347560  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.1:1
AT2G11000.2:1
AT2G11000.4:1
AT2G11000.3:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATCTCCATTTATGAGTTCACCTTCTTGAAGATctctaaagcagacatggcagcaaaaagatt
gaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCTAAAGCAGACATGGCAGCAAAAAGATTGAAATTATCTCCATTTATGAGTTCACCTTCTTGA
AGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.503667275
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017