Detail information of Os05g0550900_circ_g.1


General Information
CircRNA Name Os05g0550900_circ_g.1
ID in PlantcircBase osa_circ_042172
Alias NA
Organism Oryza sativa
Position chr5: 27366613-27366814  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os05g0550900
Parent gene annotation Hypothetical protein. (Os05t0550900-00)
Parent gene strand -
Alternative splicing Os05g0550900_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os05t0550800-01:1
Os05t0550800-01:1
Os05t0550900-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCATGGTACCAACGATCGAAAATGATTTGGTACCTTGATGTATCTTTTATTGGACCGGAGCAA
ATCTCTTGCCGGTGACATGGTGCCATGTTCTTGATGggtacgccatgactgacgctctgcctct
gctccattgctgtctcgccattaccggtggagatttgctccgttccaataaaaaatatctcgag
gtaccagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 202
Transcript exons: 27366613-27366814
GGTACGCCATGACTGACGCTCTGCCTCTGCTCCATTGCTGTCTCGCCATTACCGGTGGAGATTT
GCTCCGTTCCAATAAAAAATATCTCGAGGTACCAGTACCTCATGGTACCAACGATCGAAAATGA
TTTGGTACCTTGATGTATCTTTTATTGGACCGGAGCAAATCTCTTGCCGGTGACATGGTGCCAT
GTTCTTGATG

Genomic sequence GGTACGCCATGACTGACGCTCTGCCTCTGCTCCATTGCTGTCTCGCCATTACCGGTGGAGATTT
GCTCCGTTCCAATAAAAAATATCTCGAGGTACCAGTACCTCATGGTACCAACGATCGAAAATGA
TTTGGTACCTTGATGTATCTTTTATTGGACCGGAGCAAATCTCTTGCCGGTGACATGGTGCCAT
GTTCTTGATG
Conservation Information
Conserved circRNAs NA
PMCS 0.118811881
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study