Detail information of BGIOSGA017050_circ_g.4


General Information
CircRNA Name BGIOSGA017050_circ_g.4
ID in PlantcircBase osi_circ_014737
Alias Chr04:30990192_30990880(MH63RS2), Chr04:30990192_30990880(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 29145488-29146176  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ, CIRI2
Parent gene BGIOSGA017050
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA017050_circ_g.1 BGIOSGA017050_circ_g.2 BGIOSGA017050_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA017050-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTTCCAATCAGCAATA
CCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAGggaatgaggattcaccgagctccttgaa
gtctaatgcaaaaggcaatgaggacgattttgatgattttgatcctcgtggatcttcttcaaat
ggtaaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGAATGAGGATTCACCGAGCTCCTTGAAGTCTAATGCAAAAGGCAATGAGGACGATTTTGATGA
TTTTGATCCTCGTGGATCTTCTTCAAATGGTAAAGTATTTTATTATGCTATTTCTTTGCCAGGA
TATTTGTTTTTAACTGTACTACTGAATGCATGTTCCAGTCTTGGCATGAAAATATTTCAAAACT
GTCACTTTTTCAAGCATTTCACCCCCTCAATTCTGCATTTACATCTTGCAAATGTTGCGCTTAT
ATTATTATCTTCTGCCCAACTATAATTGGAAGGTCACCAGGTGAATGACCTCTTGCTGGAAATA
TCAAACAAATATATCCTGATTATTATAACTATTTGGCTGAAGTGAACAAGTATGCAGGTTTTTT
TTTTCCTTTTATCGTGAAAAGTAGTCAGTGTTATATGATACATTTTCCAAACATGAAGATAATA
CAATTGTATATGTAGTTGTGATCCTTAATTCTTTCAATCTCTATCTACAGGTGCAGCTAATACA
AACACCAGTGGCGTGGATCTTTTTGCCCCAAACTTATTGGATGATTTCATCGATGTGCCTGCAG
CAGCAACTCATGAAACAAACGACTCTGCAGACGCTCAGGTTGATCTGTTTGCTGATGCAGATTT
CCAATCAGCAATACCAAGTACAGAAACAGCTGCGGGTTCAGATGTCCAG
Conservation Information
Conserved circRNAs osa_circ_025057
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021