Detail information of AT1G80830_circ_g.2


General Information
CircRNA Name AT1G80830_circ_g.2
ID in PlantcircBase ath_circ_011367
Alias NA
Organism Arabidpsis thaliana
Position chr1: 30373640-30373876  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method circRNA_finder
Parent gene AT1G80830
Parent gene annotation Metal transporter Nramp1
Parent gene strand -
Alternative splicing AT1G80830_circ_g.1 AT1G80830_circ_g.3 AT1G80830_circ_g.4 AT1G80830_circ_g.5 AT1G80830_circ_g.6
Support reads 5
Tissues root, whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT1G80830.2:1
AT1G80830.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTACATATTGTCCAGCATAAGTTCCGGTTATCGTCGAGCTCTGACCAGAAGCAAGAAGCGC
GATTGCAAATAGCTTTGAGCTCCATTTTCCCACAACtaccgaggcaatgatgattaactttcca
gctccagctgaaccaccgatgagagcaacaattagactcgggattatagctaaacatcttgtta
gtaagttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TACCGAGGCAATGATGATTAACTTTCCAGCTCCAGCTGAACCACCGATGAGAGCAACAATTAGA
CTCGGGATTATAGCTAAACATCTTGTTAGTAAGTTTCTGAGCCATGGCTCGAGTCTGAGATCAA
GAAAGCCCTGCATTACATATTGTCCAGCATAAGTTCCGGTTATCGTCGAGCTCTGACCAGAAGC
AAGAAGCGCGATTGCAAATAGCTTTGAGCTCCATTTTCCCACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.165612201
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017