Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | AT1G10840_circ_g.7 |
ID in PlantcircBase | ath_circ_001997 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3608914-3609927 JBrowse» |
Reference genome | TAIR10.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT1G10840 |
Parent gene annotation |
Eukaryotic translation initiation factor 3 subunit H |
Parent gene strand | - |
Alternative splicing | AT1G10840_circ_g.1 AT1G10840_circ_g.2 AT1G10840_circ_g.3 AT1G10840_circ_g.4 AT1G10840_circ_g.5 AT1G10840_circ_g.6 AT1G10840_circ_g.8 AT1G10840_circ_g.9 AT1G10840_circ_g.10 |
Support reads | 47 |
Tissues | inflorescences |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G10840.1:5 AT1G10840.2:5 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.18438898 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
3609658-3608916(-) |
Potential amino acid sequence |
MMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKA LKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIPAVLKIIKHCKEFSPTLVTGQLLGLDVGS VLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETF MNYQENIKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEI PAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLR EVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQENIKRCVCIIYDPSKADLGVLALKALKLSDS FMELYRGGNFTGEKLREKNFSWMDIFEEIPAVLKIIKHCKEFSPTLVTGQLLGLDVGSVLEVTN CFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTVLGSYQTVELIETFMNYQEN IKRCVCIIYDPSKADLGVLALKALKLSDSFMELYRGGNFTGEKLREKNFSWMDIFEEIP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |