Detail information of Os01g0321300_circ_g.2


General Information
CircRNA Name Os01g0321300_circ_g.2
ID in PlantcircBase osa_circ_001539
Alias NA
Organism Oryza sativa
Position chr1: 12238608-12238854  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os01g0321300
Parent gene annotation Similar to Protein translocase subunit secA. (Os01t0321300-00)
Parent gene strand -
Alternative splicing Os01g0321300_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTGACCATGATCATATGCAAAATACGGAAAGAGCTTGTGTCAAAGGCAGAATCTTGCAATT
TGCTTGCAAACAATGATAGCTCAATCAGTATATTACtcaaatgggatgatccatggggaagtgt
cataagcaaaacactatcaaaaagttagtagttgttctggagttcaaagaaatcaatattacta
atgaagtg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 247
Transcript exons: 12238608-12238854
TCAAATGGGATGATCCATGGGGAAGTGTCATAAGCAAAACACTATCAAAAAGTTAGTAGTTGTT
CTGGAGTTCAAAGAAATCAATATTACTAATGAAGTGCACCATCTCTAAATGTAGGGAACTGTGG
GATTTATCAGCATTTTCAAAGTTTGACCATGATCATATGCAAAATACGGAAAGAGCTTGTGTCA
AAGGCAGAATCTTGCAATTTGCTTGCAAACAATGATAGCTCAATCAGTATATTAC

Genomic sequence TCAAATGGGATGATCCATGGGGAAGTGTCATAAGCAAAACACTATCAAAAAGTTAGTAGTTGTT
CTGGAGTTCAAAGAAATCAATATTACTAATGAAGTGCACCATCTCTAAATGTAGGGAACTGTGG
GATTTATCAGCATTTTCAAAGTTTGACCATGATCATATGCAAAATACGGAAAGAGCTTGTGTCA
AAGGCAGAATCTTGCAATTTGCTTGCAAACAATGATAGCTCAATCAGTATATTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.356530214
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017