Detail information of Os01g0926350_circ_g.7


General Information
CircRNA Name Os01g0926350_circ_g.7
ID in PlantcircBase osa_circ_005616
Alias Os_ciR6409
Organism Oryza sativa
Position chr1: 40612050-40612156  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os01g0926300
Parent gene annotation Similar to Transaldolase (EC 2.2.1.2). (Os01t0926300-01)
Parent gene strand -
Alternative splicing Os01g0926350_circ_g.1 Os01g0926350_circ_g.2 Os01g0926350_circ_g.3 Os01g0926350_circ_g.4 Os01g0926350_circ_g.5 Os01g0926350_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0926350-00:1
Os01t0926300-01:1
Os01t0926350-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGTTTGCACGCATCTTGGATATCCTTGATGACAAGTTCCCAATAAGCGCTCTctccacagaaa
catacccatctgccccatcggtctggtcgtagataggctcaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCACAGAAACATACCCATCTGCCCCATCGGTCTGGTCGTAGATAGGCTCAAAAAGTTTGCAC
GCATCTTGGATATCCTTGATGACAAGTTCCCAATAAGCGCTCT
Conservation Information
Conserved circRNAs NA
PMCS 0.35922243
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015