Detail information of AT3G02540_circ_g.1


General Information
CircRNA Name AT3G02540_circ_g.1
ID in PlantcircBase ath_circ_019327
Alias NA
Organism Arabidpsis thaliana
Position chr3: 533566-535466  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT3G02540
Parent gene annotation Ubiquitin receptor RAD23c
Parent gene strand -
Alternative splicing AT3G02540_circ_g.2 AT3G02540_circ_g.3 AT3G02540_circ_g.4 AT3G02540_circ_g.5 AT3G02540_circ_g.6 AT3G02540_circ_g.7 AT3G02540_circ_g.8 AT3G02540_circ_g.9 AT3G02540_circ_g.10 AT3G02540_circ_g.11 AT3G02540_circ_g.12 AT3G02540_circ_g.13 AT3G02540_circ_g.14 AT3G02540_circ_g.15 AT3G02540_circ_g.16 AT3G02540_circ_g.17
Support reads 6
Tissues inflorescences
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G02540.3:9
AT3G02540.1:9
AT3G02540.2:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATCTTTAAGCACTTTACCTTGGTGAATAAGCATCTGTTTTGCAGCAGGATACACATCTGCGCC
CTGCACACTCTCTATGTTCTTCTTCACATCAACAACctttctccccctccttcaacgggttcat
tgattaagcgtaagaagtcagcttggtggtcttgaatcaaccgcatcaagtttgggttctgttt
tcccagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTCTCCCCCTCCTTCAACGGGTTCATTGATTAAGCGTAAGAAGTCAGCTTGGTGGTCTTGAA
TCAACCGCATCAAGTTTGGGTTCTGTTTTCCCAGTTCCTGAAGCATGGGCTGAAGAAAAAACGC
AAGGACAAAATTATTTGAAACAATATTTAATGAAAACCGACAGTGATTTCAGTTCTTCTGTGAA
TTAGAACAACATACCTGCAGAACTTGAGGGTTTGCTTGCACCATTGCTCGCAGAGCTTGGAACT
AATATATACAAAAATAGTATTTATGTTTCACATTGATGTCTGATAAACTCTGTAAGCAAGTGTA
CGAGAAAAGAAAAAAACAGCTTATACCTGTTGGCTGTTGCGCAAGAAGTCAAGTGTTCCAGCAC
CAGGATTTCCTCCAACATTTGGCAAGCCCTGTCAGAGATAAAGAGCAGATTTTAGCTGCACACC
CATCTATAATCAAGAGTTTAAATGAACCAAATCTGCTTTCTATCTCAAGGTGTATTACCTGTGG
GAAGAGATCTAACGGATTTGCATTAGGACCACTTGCGGGTGCTGCTGCAGGTTGTTGAGTCTGT
GCTGGAGGATTTGCAGGCTGTCCGGCACTAGCTGGAGGACGGGCAACTGGTGGAACTTCAGCTT
GCTCAGGGATCCCCTAAGACATGAATTTCGGTGTTTAAATATGTATTCTCTCACTTAGTAGGTA
GCCAATCATAATAAAAAGGAAATCTATTCTCGGCATAGTGATTGATTAGTGACCAAAATCTGCC
TCTTAAGTTGCATGACGGTACGAAAATAGAGAGAAAATAATTGAACTCACAGTATAAAGATATT
CCACAGCTCTTTCAGGGTTGTTAAATGCAGCACGAAGTGCAAGGACAACAGTCTCACGATCCCA
GGTTCCTCCACCCATGTCAAGAATCTGCTGAATGGTACTCTCTAAATTACTTCCAGCGGCTAGA
TTTGATGCTGCTTGTCCGTAAACATCACCTTGACTTCTATTTTAATCAAAACAAATAGGAAACA
GAATAAGAGTAGGTCAATTTCTGAGCTGCGCAGAAGACTGAAACGAGATGCTAACCCCACAGGA
GCTGAGTCTGGTGCAGGAGTGCTTGATGATATAGTAGCAGGTACAGGTTCAGGTATAGGGGTAG
TCACAGTTTCAGTTGCAGCTACAGGTGCAGGTGTCGGTGTCGGTGCAGGTGGTGGTGGACGTGT
TGGTGCAGGTGCCACTGGTCTGCACAGTTTTCAAATTGGGGGCAAAATATTGAAATTAGTTGTA
GAATGTAGCCACAGTTTTTTCAGATAGATTCTAGGAATTTTTCAAACAGAGAGTACTTGTCTCG
AAAACTCACGCTGATACAGAAGCTGGAGTCTGAGGGGAAATTGAAGGCTGTGATGTTGAGGGAG
GTATCGACTTGGCCTAAACCAACACCAAAGTTAGATCATTCAACAAACAAGAAAATACATAGAA
GCATTTGACACTTTCGTTTCATTAGTTGCAGAGGCAAGAAGTTTTTCCAAAAATCCCAAGTTGC
AGCATCTGAGCCTTTATAATGATGTCATAACAACAGAACCAACTCACCTGCGATGTGCCAGCAG
ATGCACTAGATGCTGCAGCTGAAGCAGGTTTACTCTATTACATGTTTAGCACCAGAGAGCATAA
ATCAGAATCGGGTAATCAAAGAGCTAAACAGAAAACAACAGAATTACTTATTTATTCCCCAGAT
CCAAAACGTACCTTGTTCATCATAATGACAATAAAACTGTTCTCAGCAACTTTGTTTTCCTCAA
TAGTTGTCTCATCTTTAAGCACTTTACCTTGGTGAATAAGCATCTGTTTTGCAGCAGGATACAC
ATCTGCGCCCTGCACACTCTCTATGTTCTTCTTCACATCAACAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.140744284
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017