Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G18040_circ_g.1 |
ID in PlantcircBase | ath_circ_003194 |
Alias | Ath_circ_FC0418 |
Organism | Arabidpsis thaliana |
Position | chr1: 6208562-6209055 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | AT1G18040 |
Parent gene annotation |
Cyclin-dependent kinase D-3 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G18040.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.364268018 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6208972-6208564(-) |
Potential amino acid sequence |
MLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPADIKSYLLMTFKGLAYC HDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRKFTHQTEQTVAIKKIRLGKQREGVN ITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPADIKSYLLM TFKGLAYCHDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRKFTHQTEQTVAIKKIRL GKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRDSNIFLSPA DIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRKFTHQTEQT VAIKKIRLGKQREGVNITALREIKMLKELKHPHIILLIDAFPHKENLHLVFEFMETDLEAVIRD SNIFLSPADIKSYLLMTFKGLAYCHDKWVLHRDMKPNNLLIGVDGQLKLADFGLARIFGSPNRK FTHQ(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017;Chen et al., 2017a |