Detail information of Os02g0167500_circ_g.2


General Information
CircRNA Name Os02g0167500_circ_g.2
ID in PlantcircBase osa_circ_013334
Alias NA
Organism Oryza sativa
Position chr2: 3625211-3629917  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os02g0167500
Parent gene annotation RNA recognition motif domain domain containing protein. (Os02t01
67500-01)
Parent gene strand -
Alternative splicing Os02g0167500_circ_g.3 Os02g0167500_circ_g.4 Os02g0167500_circ_g.5 Os02g0167500_circ_g.6 Os02g0167500_circ_g.7 Os02g0167500_circ_g.8
Support reads 1
Tissues seed
Exon boundary   No-No
Splicing signals   CC-TA
Number of exons covered Os02t0167500-01:12
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTCTATCATGTGTGTCCTGATAGAATGCCCCCCTTCCATATGAATCTCCTGGGAAGCCATC
ATCCACAAACCTCCTACCATTGTAGGATCCACCGGCcttggatccagtccatcattatcacttc
caagtgaagaagatgatccatatagatttcgcctttctgcagcccgatctctgtactgtgaatg
tcctggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGATCCAGTCCATCATTATCACTTCCAAGTGAAGAAGATGATCCATATAGATTTCGCCTTT
CTGCAGCCCGATCTCTGTACTGTGAATGTCCTGGAGCCTCAGAAAACCGACGTTTACCACTCCC
TGAAACTCCAGATGGAGTATAAGATGCTAGAGCAGATAATTCTGTTTTGAAGGGAGCAGAAGTA
GGTGCCCCAGCATTTGCTGTTAACCCACATGTGCTTGTTGGTATGTTGGAGAAAGAATCAGCAC
CACCAGCATCAGATGGCGCATGAAATGCAGTGTCTGATCTGACTATTCCTCTACCAGAGCCTCT
TATGACACCCATAATGGTAGTTCCTAAACTGTTACTGACAGGTGTAGGCTTTATATCAGAATCT
ATCATTTCTGTGGGTGCAGCTGTTCGTCCAAGAGAATTATAGCTAGCAGGCGAGTTCATGTCCT
TAGCATTTCCAACATCAGATTTAGGCTTAGCTTTCACTGCAAATCCAGTTGAATTGTGTAAATT
GTTTAATTTATCATCAGCAGAGTTGGATGGTTCCTTGTCATCAAGGATAGCACGCCCTGCCTGG
CCTTCTTGATTTCTTTGTTTCCACATTGCTAGGACATTATTCATCTTTTTCTTATTCGCCAAAA
GACTACCTTTTGATGCCAACTTGATCTCTTTTGCTCTCTCCTTTTCTTTCTTTTCTGCAGCCAG
CGCTGCACTTGCAGCAGCTTGAACAGCTTCAGGTAATGAAGTTTTCTCACTTTGTTTAATCGTG
GCTGCAGGTGCAGAAATCACTACATTTTTACCACTACTTTCTGAGGTCTTCGTGCTAGTATTTG
CCATGTCCCCAGCTGCTTTACTGCTGTTCTGTTCACTACAAGGGACATACTGTTGAGTTTGTTG
ATCATATGAATACCACACTCCAGCATTACCATCATAGTAAAGTCCTGAAAACAAATACAAGGTT
ATAAACTGTAATACTTTAACAATTGACATGGAGCAAACATTTTTTTTTAAAAAAAAGGAAAATT
GGAAAACATTTCAAAAACAAGTCACATGGAAAGTATTTCTGAATTGATCATAGTAAGAAAATTG
TGGCAATATACATACCGGTATTTCCATCATAATAGAATCCTGAGGCTGAATCATAGTAATAACC
AGACTTTTCATCCCAAACAAATCCAGACTGTGGAGCAGAGCCACTGCTCTGAGGTTCCGAGTTG
CTATTCAGTTTGTCATCAGGATTGTACTCTTTTGGGGCCCAACCTATAGCATCATACTGGTCCA
AAGGGTAAAAGAAATAAAATAATAAGCATCATGTCTATAATCTGCATAAATTGTATGTGAAAAA
CAATTGCACCTTACCCTACAGGGTGAGAAATTATTGGTTTTAGTGCATCATTTAATGGAGTTAC
ATAACAGCAGTTCTCATTTTCTTCAATGCACTGTTTACTTTCCTGTGCACATGGTGACAAATTA
CAAGTAGGGGCTACAACTGACCTGCTGAGAAAATGATGCAGCCTCAATGGCAGCTGCAGCAAGG
CTGTTTGACTGTGAAGCCCCTGATACCGGTCCATGTGTGCTTTTAGCATAAGTTACACGTAAAA
CCTGACCATTCTTCTCAAGTGTAATCCCATTCGTAGCTTCAAGAGCTTTTGTAGCTTCTTCCAC
CTAACACAATTGGATGCAGATAAATATGGGAGTAGACATCAAAGGAAAACTCAACATTTTTCCC
ACCACTACTTACTGAATGAAAATGGATGAAAGCAAAACCTCTGGACACATGAGTAAACTTATCC
CGAACAAGGCGAATGTCCTGCACAACAACAGCATGTCATTCTCTCAACAGAAACGGAACACTGC
AAATTTCAAGAGTCATAAGCTTCTTCCCACCTTTATAGGTGCATGCTTGGCAAATTCATATCGA
AGCATTTCCTCGTCAGCATTTTCATCCAGACCACGAACAACTAAAACATGAGTTGGACCTGAAA
ATGCTAGTGTCTAATAAGGCAACTGGCAAAATAGTTTTAATAATCCTACAATAGAAGAACAGAG
CTTTGCCTAGTTCAGATCCCCTTTTTGGATGGAGTGGAGTAGAACTTGTTGGATCAGCTGGTAG
AGAATCTTCCGTTCGTGGTTCATTACACTACAAGAATAGAATGCAATTAGGCAAAAAAAAATCA
AGAGCTTAAATAAACAAACATACAATCAGTTAGAAAGAAATGTTATTCCCCTGATGCCTTTATA
ATTGTCATCTTGGTCCTTGGAGATAGACAAAGTAGTTTTCATGACAAATTCACTAATGGCATTT
TCCATGTGACACATCTTATTATTTTGTTTATATTTATACTAGTGGCTAATGATCCAAACATCAT
GAGTTAATCCAAAAGCTTACAGTTTATGCAATTATGACACTACTTAATTTGCAACTTCTCATTA
ACAATAGGGATGTTGAATCGAAAGGGAAAACAGTACTCCATCAAGGAAATCGAGGACAGAGAAA
CAATCCAAGCATGCTAGATTGGATTTATAAACAGAAATGACATCATGCAAACTTCTGTAAGACA
ATACTAAATGCAATGGGTATTGCGATGAAGAACACGCCTACAAAAATAATTTACAACAATACAG
AGTAAAACATACCTGAAAACATGAAGTTCTGCGAGCAAAGTTCATGCATCCACATATAGTACAT
ATCCAATCACATGGCGCAGCAGCAGTCCTGTGCCCATAGTTATACCTTGTAAAATTTTCTTCTC
CATGAGAAGGCCCACTCATCCCACTAGTTGGTTTACTACTGCAGTAAACAAGTTGCCAGCAGTA
ATTACAGTGGAAGAAAAAGATATAAGTATATACTTTTGCAAAAGGTAAGATGCATGTAAATTGT
TTTTTCTCAATGTGTCCTTCTGCAAAACTAAGCTTGATGCAAGTAATACACACTAGACAAAGAC
ATGAATAACATCCAAAAGAAAGGAACGAGCAACTTAACACACTGTGAATCTTTAACACACCAAT
GGTAGATTGACTGTTTTGCATCGCAAGCTTATCACAATATAAAAACATTTACATGACCTTAGCA
ATATGCTACCAAAATAATTAGATATTTTTGTGCCCTATTTGGTCAGTCATATGCTATTTGGATC
ATTGTATTGCTAATGCAATCACATAGTTCAATTGAAAAACCTTAAGTGGGAAAATAGTGAGCAG
TGAAACAACAAAAGGCAGAGCCACACGAGAATTTGGTATATGAAAGACATGCTCCAGTGAAAAA
TTACTATTACATGATGCACCCAGTTTAAACAGTTCAACCATTATTGAACCATCGAATATGCTGC
AATTGTGTTGTTCACACCTCAGTATCACGTAAAGCAGACTACTCAACAATGTTACATACAAGTA
AACTGGTGAATAAATATAGACGACTTCAGCTATTATAAGAAAACAAAAAGGGCACGTACCTGTA
CTGAAAAAATACCTTTCTACCATCAATTAGAAGGCCATTGTCTCCAACACCTTCCATCATTCTG
CGGGCAGCTTCCTGTAGAGTACAATAAAATTTCTGAGCATGACACTACACGACGGTCTGAACAG
GTAAGGTGATAGATCTTTTACGGTTAATACCACAGTAGGGAAGTCGATAAAAGCAAATCCCCGA
GACATGCCAGAAGATCGTTCCTTAATTACGCGCACACTACGGAGAGGGCCCCACTCAGCCTAAA
AGATATCAGACTCCAAATGATTAAATCGAACCAGACAATACACTTGCAACCAGTTTAACAGTTT
ATGAAGAGGAACTTGTACAAGAATCTGGTTTAGGTCATCTTCATTAGTCTTCTGGGACAGACCC
TTAACAACAACAGTAGCAGATGGAGCCTACAAGCATGAATGGAAATGTTATTTGATTCATCAGT
TCAAAACACATTTGAAGCATGCAATTATGTACAAAACAAAGGAATGACCATACCACTAAATCTC
CATGCCTTCTCTCATCCCAGTCATACTCCCTTCTTCTGCCAAAGGAATTGTCATCATAAAAGCC
ATCTCTTTGGTTCCGACCACGACTTTTGCCACGGGGTGATCTTGATCTAGACCGAGATCTTGAT
CGTTCGTCACGCCCACGAGATCGTGAACGGCTATGTTGCATGTATGGACTTCTGTCTCTTTCAT
GACTCAACCCTCTTCTTTCATGTTCACTCTCACATAAATCACGCCTTCTCCAGCTACCATCTCT
CCTGCTTTTCTCATAGTCCGAATCATAGCTGTAACGATCATAATCACGATCTCTCTCATAGCTA
TCCTCTCTACTATCCTCTCTACTTTGGTGAGAGCTGCGGTACCGGTCTTCAAAGTCACCGTGAA
ACTCCGCACGGTCTCTACTCCCAATCCTTTTGTTCCTATCAAAACAAAAATCACGGTAACTACC
AGATTCATAGTTATCAGCAGCATAATTATCGTGGAGTATATCAACTCCTCCATAGGATTCAAAT
TCATGATGCTTTCCATCATTGCAATGATAAGTGTCATGCCTTCTGTAATCTCTAGCAGTTGAAT
ATTCATCATCATGAAACCTTCGAGGTTGAGACAACATGGGGACAGAGGGTGCAGGTGGATACAC
ATTTCTATCATGTGTGTCCTGATAGAATGCCCCCCTTCCATATGAATCTCCTGGGAAGCCATCA
TCCACAAACCTCCTACCATTGTAGGATCCACCGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.129297208
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017