Detail information of Os06g0106000_circ_g.1


General Information
CircRNA Name Os06g0106000_circ_g.1
ID in PlantcircBase osa_circ_042226
Alias NA
Organism Oryza sativa
Position chr6: 412530-412631  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0106000
Parent gene annotation Cobyrinic acid a,c-diamide synthase domain containing protein. (
Os06t0106000-01);Cobyrinic acid a,c-diamide synthase domain cont
aining protein. (Os06t0106000-02)
Parent gene strand +
Alternative splicing Os06g0106000_circ_g.2
Support reads NA
Tissues root, leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0106000-01:1
Os06t0106000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATGATGTCAGCACTTGATGTTCAAGAAATGCTTGGCTTGCCTTTGCTAGacattaagattat
tgtcaaccgagtacgcccagacctggtgaagggagagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 102
Transcript exons: 412530-412631
ACATTAAGATTATTGTCAACCGAGTACGCCCAGACCTGGTGAAGGGAGAGGATATGATGTCAGC
ACTTGATGTTCAAGAAATGCTTGGCTTGCCTTTGCTAG

Genomic sequence ACATTAAGATTATTGTCAACCGAGTACGCCCAGACCTGGTGAAGGGAGAGGATATGATGTCAGC
ACTTGATGTTCAAGAAATGCTTGGCTTGCCTTTGCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.099673203
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study