Detail information of Os05g0573500_circ_g.1


General Information
CircRNA Name Os05g0573500_circ_g.1
ID in PlantcircBase osa_circ_042195
Alias NA
Organism Oryza sativa
Position chr5: 28572664-28572738  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0573500
Parent gene annotation CCAAT-box binding transcription factor, Chloroplast biogenesis (
Os05t0573500-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   AT-AC
Number of exons covered Os05t0573500-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGGAAGGAGCAGGACCGGTTCCTGCCGATCGCCAACgggacggagaacggcggcggcggcggc
ggaggcggagt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 75
Transcript exons: 28572664-28572738
GGGACGGAGAACGGCGGCGGCGGCGGCGGAGGCGGAGTAGGGAAGGAGCAGGACCGGTTCCTGC
CGATCGCCAAC

Genomic sequence GGGACGGAGAACGGCGGCGGCGGCGGCGGAGGCGGAGTAGGGAAGGAGCAGGACCGGTTCCTGC
CGATCGCCAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.475334889
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study